BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482920
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39010.1 | Symbols: PIP2E, PIP2;6 | plasma membrane intrinsi... 1906 0.0
> AT2G39010.1 | Symbols: PIP2E, PIP2;6 | plasma membrane intrinsic
protein 2E | chr2:16291477-16294034 FORWARD LENGTH=1245
Length=1245
Score = 1906 bits (1032), Expect = 0.0
Identities = 1158/1217 (95%), Gaps = 15/1217 (1%)
Strand=Plus/Plus
Query 17 tctctctcttctctctc-tctctcAGTCCGTG-AGGCTAAACCTGAAACAATGACGAAAG 74
|||||||| ||||| || | | | |||||||| ||||||| |||||| ||||||||| |
Sbjct 39 TCTCTCTC-TCTCTTTCTTTTTTGAGTCCGTGAAGGCTAAGTCTGAAAGAATGACGAAGG 97
Query 75 ATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGA 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 ATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGA 157
Query 135 AGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGT 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGT 217
Query 195 TCATAGCTACTTTCCTCTTTCTATATGTCACCGTTTTGACAGTCATCGGCTTTAAGAGCC 254
||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 218 TCATAGCTACTTTGCTCTTTCTATACGTGACTGTTTTGACAGTCATCGGCTTTAAGAGCC 277
Query 255 AGACGGATACCAACGCTGGTGGTGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTT 314
|||| |||| |||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 278 AGACTGATATCAACGCCGGCGGCGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTT 337
Query 315 GGGCCTTCGGTGGCATGATCTTCATCCTCGTCTATTGCACTGCCGGCATCTCTGGTGGAC 374
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 338 GGGCCTTTGGTGGCATGATATTCATCCTCGTCTACTGCACTGCCGGCATCTCTGGTGGAC 397
Query 375 ACATTAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTGAGAG 434
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 398 ACATCAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTTAGAG 457
Query 435 CTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGCGGAGTTGGTTTGGTGAAAG 494
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 458 CTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGTGGAGTTGGTTTGGTGAAAG 517
Query 495 TCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGAAGGAT 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 518 TCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGACGGAT 577
Query 555 ACAATGTTGGTGTAGGTGTTGGTGCGGAGATTATCGGCACTTTTGTCCTCGTCTACACCG 614
|||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 578 ACAATGTTGGCGTTGGGGTTGGTGCTGAGATTATCGGCACTTTTGTCCTCGTCTACACCG 637
Query 615 TCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTGGCAC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 638 TCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTAGCAC 697
Query 675 CATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 CATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCA 757
Query 735 CCGGAATTAATCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTT 794
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CCGGAATAAACCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTT 817
Query 795 GGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTT 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTT 877
Query 855 ACCATCAGTTTGTGTTGAGAGCTGGCGCTATGAAGGCCTATGGGTCAGTCAGGAGCCAGC 914
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 878 ACCATCAGTTTGTGTTGAGAGCTGGTGCAATGAAGGCCTATGGGTCAGTCAGGAGCCAGC 937
Query 915 TTCATGAGCTTCATGCTTAAATTTGATT-TTTCGAACTATCGAAGAGGTGAAGAATTCTT 973
|||||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 938 TTCATGAGCTCCATGCTTAAATTTG-TTATTTCGAACTAGCGAAGAGGTGAAGAATTCTT 996
Query 974 TGGGCCAAGATGGGAGAAAGGaaaaaaaa--GGGACCCAAATCATATAAAAGAAAAAACG 1031
||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 997 TGGGCCAGGAAGGGAGGAAGGAAAAAAAAAAGGGACCCAAATCATATAAAAGAAAAAACG 1056
Query 1032 AATATTATTAAAGATGGTCGGTGAGTGACATTTACTGTGTCTTATTTGTGGCTTTGTGGG 1091
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 AATATTATTTAAGATGGTCGGTGAGTGACATTTACTGTGTCTTATTTGTGGCTTTGTGGG 1116
Query 1092 GGAGGTTTGAGTGTAACAATTTGTAACGTACAAGCCTCGTATGAATGTATGTGTTATTTG 1151
||||||||| ||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1117 GGAGGTTTGTGTGTAACAATTTGTAACGTACAAGC-----A--A-TGTATGTGTTATTTG 1168
Query 1152 ATGCATATGATATTTTTATACCTACTTATTGATGATTCTATCTTTAATCAATAATCATTA 1211
||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||
Sbjct 1169 ATGCATATGATATTTATATATCTACTTATTGATGATTCTATCTTTGATCAATCATCATTA 1228
Query 1212 TAACTTAAATTTCATAG 1228
|||||||||||||||||
Sbjct 1229 TAACTTAAATTTCATAG 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5