BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482921
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39020.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1225 0.0
> AT2G39020.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:16295315-16296328 FORWARD LENGTH=1014
Length=1014
Score = 1225 bits (663), Expect = 0.0
Identities = 778/831 (94%), Gaps = 17/831 (2%)
Strand=Plus/Plus
Query 1 AACCCTAATTTTCACAATCACAGCTACGTAACCAAAAAATGGCAGCCGCCGCACCACCAC 60
||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||
Sbjct 43 AACCCTAATTTTCACAATCACAG-TAC-CAA-AAAAAAATGGCAGCCGCCGCACCGCCAC 99
Query 61 CGCCACCAACAGCAGCACCAGAACCAAACATGGTACCACCACTAATTTCACCAATCGGCC 120
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 100 CGCCACCAACAGCAGCACCGGAACCAAACATGGTAGCACCACTAATTTCACCAATCGGCC 159
Query 121 ACCCAATCTTCTCCCGGATCCGTCTCGCAACACCGTCTGATGTCCCATTCATCCACAAGC 180
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 160 ACCCAATGTTCTCCCGGATCCGTCTGGCAACACCGTCCGATGTCCCATTCATCCACAAAC 219
Query 181 TAATCCACCAAATGGCCGTCTTCGAACGTCTCACACATCTCTTCTCCGCCACGGAATCAG 240
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 220 TAATTCACCAAATGGCAGTCTTCGAACGTCTCACGCATCTCTTCTCCGCCACCGAATCAG 279
Query 241 GTCTCACTTCAACACTCTTCACCTCTCGTCCTTTCCAATCATTCACCGTCTTCCTCTTAG 300
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 280 GTCTCGCTTCAACACTCTTCACCTCTCGTCCTTTCCAATCATTCACAGTCTTCCTCTTAG 339
Query 301 AAGTCTCTCGTTCTCCATTTCCAACAACCCTCAC-T--TCACCATCTCCCGATTTCACAC 357
||||||||||||||||||||||| ||||| |||| | ||||||||||||||||||||||
Sbjct 340 AAGTCTCTCGTTCTCCATTTCCAGCAACCATCACTTCATCACCATCTCCCGATTTCACAC 399
Query 358 CGTTTCTCAAAACGCATAA-CTTAGATCTCCCGATTGAGGATCCGGAGAGTTACAATTTC 416
||||| ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 400 CGTTTTTCAAAACACATAACCTT-GATCTCCCGATTGATGATCCGGAGAGTTACAATTTC 458
Query 417 TCGCCGGATATGTTAAACGACGTCGTTGTTGCTGGGTTTGTTCTGTTTTTCCCGAATTAC 476
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 459 TCGCCGGATATGTTGAACGACGTCGTTGTAGCTGGGTTTGTTCTGTTTTTCCCGAATTAC 518
Query 477 TCGAGTTTTTTGTCGAAGCCTGGGTTTTACATTGAGGATATATTTGTGAGAGAGCCTTAT 536
|| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 519 TCTAGCTTTTTGTCCAAGCCTGGTTTTTACATTGAGGATATATTTGTGAGAGAGCCTTAT 578
Query 537 AGGAGGAAAGGGTTTGGTAGTATGTTGTTGACTGCTGTGGCGAAACAAGCGGTGAAGATG 596
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 579 AGGAGGAAAGGGTTTGGTAGCATGTTGTTGACTGCTGTGGCCAAACAAGCGGTGAAGATG 638
Query 597 GGTTATGGAAGAGTGGAATGGGTTGTTCTTGATTGGAATGTGAATGCTATCAAGTTTTAT 656
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 639 GGTTATGGAAGAGTGGAATGGGTTGTTCTTGATTGGAATGTTAATGCTATCAAGTTTTAT 698
Query 657 GAGCAGATGGGTGCTCAGATTTTGCAGGAGTGGAGAGTTTGTAGACTTACTGGTGATGCT 716
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 699 GAGCAGATGGGTGCTCAGATTCTGCAGGAGTGGAGAGTTTGTAGACTTACTGGTGATGCT 758
Query 717 CTTGAAGCTTTTGATAAGGTAAACATCTAGAGATTGATGTTTTGGTGGCTGAGAGTTATA 776
||||||||||||||| |||| |||||||||||||||||| | || || |||||||||||
Sbjct 759 CTTGAAGCTTTTGATCAGGTCAACATCTAGAGATTGATGCTGTGTTG-CTGAGAGTTATC 817
Query 777 GAATC-GAATCACTTCCTCTTGCTTTAAGCTTTAAAGTTTGTGtttttttt 826
||||| || ||||||||||||||||| | ||||||||||||||||||
Sbjct 818 GAATCAGA-TCACTTCCTCTTGCTTT----T--AAAGTTTGTGTTTTTTTT 861
Score = 119 bits (64), Expect = 5e-26
Identities = 86/96 (90%), Gaps = 3/96 (3%)
Strand=Plus/Plus
Query 827 ATGATGATGATGAATTCGCTATGCTTACTTACTGGATTCTGAATGAG--AACA-AACCCT 883
||||||||||||||||| |||||||||||| ||||| ||||||||| || | ||||||
Sbjct 907 ATGATGATGATGAATTCTCTATGCTTACTTGTTGGATACTGAATGAGAAAAAAGAACCCT 966
Query 884 TTTGTTGAATGTATGAAATGTTTCAAGGTTTTAAAG 919
|||||||||||||||||||||||| || ||||||||
Sbjct 967 TTTGTTGAATGTATGAAATGTTTCGAGTTTTTAAAG 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5