BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482922
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39030.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1149 0.0
> AT2G39030.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:16298227-16299202 FORWARD LENGTH=976
Length=976
Score = 1149 bits (622), Expect = 0.0
Identities = 690/722 (96%), Gaps = 7/722 (1%)
Strand=Plus/Plus
Query 1 ACATCAC-AGTCTTCAAAGACAAGTAACaaaaaaaTGGCGCCTCCAACCGCAGCACCAGA 59
||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ACATCACTA-TCTTCAAAAACAAGTAACAGAAAAATGGCGCCTCCAACCGCAGCACCAGA 59
Query 60 GCCAAACACCGTGCCAGAGACTTCACCGACTGGCCACCCTATGTTTTCCCGGATCCGCCT 119
||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 60 GCCAAACACTGTGCCAGAGACTTCACCGACCGGCCACCGTATGTTTTCCCGGATCCGCCT 119
Query 120 GGCGACGCCGACTGATGTCCCTTTCATTCACAAGCTAATCCACCAGATGGCGGTTTTTGA 179
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGCTACGCCGACCGATGTCCCTTTCATTCACAAGCTAATCCACCAGATGGCGGTTTTTGA 179
Query 180 GCGCCTCACGCATCTATTTGTCGCCACCGAGTCTGGTCTTGCCTCCACTCTCTTCAACTC 239
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 GCGCCTCACGCATCTCTTTGTCGCCACCGAGTCTGGTCTTGCCTCCACGCTCTTCAACTC 239
Query 240 CCGTCCATTCCAAGCCGTCACCGTCTTTCTCTTGGAGATCTCCCCTTCTCCATTTTCCAC 299
|||||| |||||||||||||||||||| |||||||| ||||||||||| |||||| ||||
Sbjct 240 CCGTCCGTTCCAAGCCGTCACCGTCTTCCTCTTGGAAATCTCCCCTTCCCCATTTCCCAC 299
Query 300 CA---ATGACGTTTCGTCCCCTGAATTCACCCCCTTTCTTGAGACGCATAAGGTTGATCT 356
|| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 CACTCATGACGCTTCGTCCCCTGATTTCACCCCCTTTCTTGAGACGCATAAGGTTGATCT 359
Query 357 CCCTATCGAGGATCCGGACAAAGACAAGTTCTTGCCGGATAAGCTCAACGACGTGGTGGT 416
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CCCTATCGAGGATCCGGACAGAGAAAAGTTCTTGCCGGATAAGCTCAACGACGTGGTGGT 419
Query 417 GGCTGGATTCGTTCTGTTCTTCCCGAACTACCCAAGTTTTCTAGCGAAACAGGGTTTCTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCTGGATTCGTTCTGTTCTTCCCGAACTACCCAAGTTTTCTAGCGAAACAGGGTTTCTA 479
Query 477 CATCGAGGATATCTTCGTGAGAGAGCCTTACAGGA-GAAAAGGCTTCGGAAAACTGCTAC 535
|||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 480 CATCGAGGATATCTTCATGAGAGAACCTTACAG-ACGAAAAGGCTTCGGAAAACTGCTAC 538
Query 536 TGACCGCTGTGGCAAAGCAAGCAGTGAAGTTGGGTGTCGGAAGAGTGGAGTGGATTGTGA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGACCGCTGTGGCAAAGCAAGCAGTGAAGTTGGGTGTCGGAAGAGTGGAGTGGATTGTGA 598
Query 596 TTGATTGGAACGTGAATGCTATCAACTTCTATGAGCAGATGGGTGCGCAGGTTTTTAAGG 655
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCGATTGGAATGTGAATGCTATCAACTTCTATGAGCAGATGGGTGCGCAGGTTTTTAAGG 658
Query 656 AATGGAGACTTTGTAGGCTCACTGGCGATGCACTTCAAGCTATCGACAAGCTAAGCATCT 715
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 659 AATGGAGACTTTGTAGGCTCACTGGCGATGCACTTCAAGCTATTGACAAGCTAAACATCT 718
Query 716 AG 717
||
Sbjct 719 AG 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5