BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482928
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39090.1 | Symbols: APC7, AtAPC7 | tetratricopeptide repeat ... 3037 0.0
> AT2G39090.1 | Symbols: APC7, AtAPC7 | tetratricopeptide repeat
(TPR)-containing protein | chr2:16312691-16317300 REVERSE
LENGTH=1824
Length=1824
Score = 3037 bits (1644), Expect = 0.0
Identities = 1773/1834 (97%), Gaps = 13/1834 (1%)
Strand=Plus/Plus
Query 1 ACTTCATCGCTGCTCCGAAGAAAAAACTCCACCATTGCCACTAACCACGAACTCTCTTTG 60
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 1 ACTTCATCGCTGCTCCGAAGAAAAAACTTCACCATTGCCACTAACGACGAACTCTC-TTG 59
Query 61 TCTCTCAAATGGAGGTTCCAAAGGATCAGATCGCGAATCTT-ATAGAGCATGGGCTCTAC 119
||||| ||||||||||||||||||| |||||||||| | || |||||||||||||| |||
Sbjct 60 TCTCTGAAATGGAGGTTCCAAAGGAGCAGATCGCGACT-TTAATAGAGCATGGGCTTTAC 118
Query 120 GATTCTGCTGAAATGCTTGGCTGCTTTCTCGTTTCTTCTTCTACTGTTAGCGCCGAAACT 179
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 119 GATTCTGCTGAAATGCTCGGCTGCTTTCTCGTTTCTTCTCCTACTGTTAGTGCCGAAACT 178
Query 180 AGTCCTCAGCTCAAGGCGGAGAATTTGATTCTACTGGGCGATGCTTTATTTCATCAGAGA 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 179 AGTCCTCAGCTCAAGGCGGAGAATTTGATTCTACTGGGTGATGCTTTATTTCATCAGAGA 238
Query 240 GAACACCGGAGAGCTATTCATACGTACAAGCAAGCGTTGCATCATTACACAAGGATTCCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAACACCGGAGAGCTATTCATACGTACAAGCAAGCGTTGCATCATTACACAAGGATTCCG 298
Query 300 AAGCAAAGCTCCGGTATTTCGAGGAGTTCATTATCTTTATCTACAAGATCATCTGTGAAT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 299 AAGCAAAGCTCCGGTATTTCGAGGAGTTCATTATCTTTATCTACCAGATCATCTGTGAAT 358
Query 360 GCCTCTAGCATTTCTGCTATTAATGAGAACGAGGTGAGATTCAAGATTGCTTCATCTCAC 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCCTCCAGCATTTCTGCTATTAATGAGAACGAGGTGAGATTCAAGATTGCTTCATCTCAC 418
Query 420 TTTGCTCTTAATGAAACAAAAGCTGCGATTGCTGAGATGGAATCTGTCAAGACCAGGAGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTGCTCTTAATGAAACAAAAGCTGCGATTGCTGAGATGGAATCTGTCAAGACCAGGAGC 478
Query 480 TTAGAGATGAATATACTGATGGCAAAGCTTCATCGAAATTCTGGATACAACCGTGGTGCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTAGAGATGAATATACTGATGGCAAAGCTTCATCGAAATTCTGGATACAACCGTGGTGCT 538
Query 540 ATTGCTTTTTATAAAGAGTGTTTAAGGCAGTGTCCTTATGTACTCGAAGCCGTCATAGGT 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 539 ATTGCTTTTTATAAAGAGTGTTTAAGGCAGTGTCCTTATGTACTTGAAGCCGTCATAGGT 598
Query 600 TTAGCTGAACTGGGAGTCAGTGCAAAGGATATCATATCATCTTTTACCCAGACTTCAAAT 659
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 599 TTAGCTGAACTGGGAGTTAGTGCAAAGGATATCATATCATCGTTTACTCAGACTTCAAAT 658
Query 660 AGAAGTGCAAAGGTTTCGCTCGATCAGATAGATCCTACCCGTTGGTTGCAACGTTATGTA 719
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 AGAAGTGCAAAGGTTTCACTCGATCAGATAGATCCTACCCGCTGGTTGCAACGTTATGTA 718
Query 720 GAGGCCCAGTGTTGTGTTGCTTCGCATGCTTACAAAGGGGCGCTGGAACTCTTTGCTGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAGGCCCAGTGTTGTGTTGCTTCGCATGCTTACAAAGGGGCGCTGGAACTCTTTGCTGAA 778
Query 780 CTCTTACAACGATTTCCAAATAATGTACACTTGTTGACTGAGACAGCAAAGGTTGAAGCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTCTTACAACGATTTCCAAATAATGTACACTTGTTGACTGAGACAGCAAAGGTTGAAGCC 838
Query 840 ATTATCGGGAAAAATGATGAGGCCATAATGAGATTTGAGAAGGTTCGGTCAATTGATCCT 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTATTGGGAAAAATGATGAGGCCATAATGAGATTTGAGAAGGTTCGGTCAATTGATCCT 898
Query 900 TACACAAC-AACCAGTATGGATGAGTATGCAATGCTGCTTCAGATAAAGTGTGATTATTC 958
|||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 899 TACACA-CTAACCAGTATGGATGAGTATGCGATGCTGCTTCAGATTAAGTGTGATTATTC 957
Query 959 TAGGCTAAACAAGCTCGTCCACGATTTATTAAGCATTGATCATAACAGAGCAGAAGTATT 1018
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 958 CAGGCTAAACAAGCTCGTCCACGATTTATTAAGCGTTGATCATACCAGAGCAGAAGTATT 1017
Query 1019 TGTTGCTTTGTCTGTACTATGGGAAAGGAAAGATGCAAGGACGGCATTATCTTATGCTGA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGTTGCTTTGTCTGTACTATGGGAAAGGAAAGATGCAAGGACGGCATTATCTTATGCTGA 1077
Query 1079 GAAGAGTATCAGGGTAGACGAGAGGCACATACCCGGCTACATAATGAAGGGAAATCTTCT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1078 GAAGAGTATCAGGGTAGACGAGAGGCACATACCCGGCTACATAATGAAGGGAAATCTACT 1137
Query 1139 TTTACAAGCAAAACGACCAGAAGCTGCAGCGATCGCCTTCAGGGCTGCCCAGAATTTGAG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTTACAAGCAAAACGACCAGAAGCTGCAGCGATCGCCTTCAGGGCTGCCCAGAATTTGAG 1197
Query 1199 GTCCGATCTTCGTTCATATCAAGGCTTAGTCCATTCTTATCTTGCATTTGGTAAAACCAA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTCCGATCTTCGTTCATATCAAGGCTTAGTCCATTCTTATCTTGCATTTGGTAAAACCAA 1257
Query 1259 GGAAGCATTGTATACCGCCAGAGAAGCAATGAATGCAATGCCTCAATCCGCAAAGGCTCT 1318
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1258 AGAAGCATTGTATACCGCCAGGGAAGCAATGAATGCAATGCCTCAATCCGCGAAGGCTCT 1317
Query 1319 GAAATTAGTTGGTGATGTTCATGC-TAGTACATCAAGTGGCAGGGAAAAGGCaaaaaaaT 1377
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 1318 GAAATTAGTTGGTGATGTTCATGCGTT-TACATCAAGTGGCAGGGAAAAGGCAAAAAAGT 1376
Query 1378 TCTACGAGTCAGGTCTGAGGCTTGAACCTGGGTACCTTGGAGCTGCCTTAGCTCTGGCTG 1437
| |||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||
Sbjct 1377 TTTACGAGTCAGGTCTGAGGCTGGAACCTGGGTACCTTGGAGCTGTGTTAGCCCTAGCTG 1436
Query 1438 AGCTTCATCTAATGGAAGGGAGGAATGGAGATGCTGTATCACTACTTGAACGATATCTCA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGCTTCATCTAATGGAAGGGAGGAATGGAGATGCTGTATCACTACTTGAACGATATCTCA 1496
Query 1498 AAGACTGGGCTGACGATTCTCTCCATGTCAAGCTAGCTCAAGTGTTTGCTGCAACAAATA 1557
|||| | || || ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1497 AAGATTATGCAGATGATTCTCTCCACGTCAAGCTAGCTCAAGTGTTTGCTGCAACGAATA 1556
Query 1558 TGCTACAAGATTCTTTATCACACTATCAAGCTGCATTAAGAATAAATCCACAGAATGAGG 1617
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1557 TGCTACAAGATTCTTTATCACACTTTCAAGCTGCATTAAGAATAAATCCACAGAATGAGG 1616
Query 1618 CAGCCAAAAAAGGACTAGATCGCTTGGAGAAACAGATGAAGGGAATAGACCCAGATGCAA 1677
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1617 CAGCCAAAAAGGGACTAGATCGCTTGGAGAAACAAATGAAGGGAATAGACCCAGATGCAA 1676
Query 1678 CAGATGAGAATGACGAGAACGATGTTGAAGATGTTGATGGAGACACCGAAGAAGCTGAGC 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CAGATGAGAATGACGAGAACGATGTTGAAGATGTTGATGGAGACACCGAAGAAGCTGAGC 1736
Query 1738 TCATGTGAAGAGATTCTTAGTAGACCAGAAGAGTGTGTAAACTGTAAAACTATCGAATCC 1797
|||||||||||| | || |||| ||||||||||||||||||||||||||||||||||
Sbjct 1737 TCATGTGAAGAG-TAG--AG-AGAC-AGAAGAGTGTGTAAACTGTAAAACTATCGAATCC 1791
Query 1798 TTAAACATTAATATTAATAGCAAATGTCATTCCT 1831
|||| |||||||||||||||||||||||||||||
Sbjct 1792 TTAA-CATTAATATTAATAGCAAATGTCATTCCT 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90611983725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5