BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482930
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39110.1 | Symbols: | Protein kinase superfamily protein | ... 1971 0.0
AT5G35580.1 | Symbols: | Protein kinase superfamily protein | ... 63.9 4e-09
> AT2G39110.1 | Symbols: | Protein kinase superfamily protein
| chr2:16319664-16321685 FORWARD LENGTH=1531
Length=1531
Score = 1971 bits (1067), Expect = 0.0
Identities = 1310/1422 (92%), Gaps = 37/1422 (3%)
Strand=Plus/Plus
Query 1 Gtcttctctcttctcctcttatctctttctctgccattttcttttgctttaaagctctct 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GTCTTCTCTCTTCTCCTCTTATCTCTTTCTCTACCATTTTCTTTTGCTTTAAAGCTCTCT 60
Query 61 cAATCATGAACATGAAGATCCCCATCACAACATTTCAGTCATCCTCATGAATAATTCTAC 120
||||||||| |||||||| |||||||||| |||| || ||||||||||||||||||||||
Sbjct 61 CAATCATGATCATGAAGACCCCCATCACAGCATTCCATTCATCCTCATGAATAATTCTAC 120
Query 121 ATCAGTGAGGAGGCTGGTTTCGTCTAAAGCAATGAAATGTTTCTACTTCAGCAAAGACAA 180
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 121 ATCAGTGAAGAGGCTGGTTTCATCTAAGGCAATGAAATGTTTCTACTTCAGCAAAGACAA 180
Query 181 AACTCAGGATGATGAAGCTAAGACGAGAAAGTTTGGTTCCAT-TACGATGGCTAGAGGAG 239
|||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 181 AACTCAGGATGATGAAGCTAAGACTAGAAAGTTTGGTTC-AGCTACGATGGCTAGAGGAG 239
Query 240 GATCAGGGTCTGAATTTAACTCTGATACAAGTACTGCTACTTCCATTACTTCTTCCTTGC 299
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 240 GATCAGGGTCTGAGTTTAATTCAGATACAAGTACTGCTACTTCCATTACTTCTTCCTTGC 299
Query 300 ACGTTCTCTCAGAGACACACAGTAACAATCTCAAAGTCTTTGCCCTCGATGACCTTAAAA 359
|||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 300 ACGTCCTCTCAGAGACACACAGTAATAATCTCAAAGTATTTGTCCTCGATGACCTTAAAA 359
Query 360 CTGCTACCAAAAATTTCAGCCGCTCATTGATGATCGGTGAAGGTGGCTTTGGCGGTGTCT 419
| |||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 360 CCGCTACCAAGAACTTCAGCCGCTCCTTGATGATCGGTGAAGGTGGCTTTGGTGGTGTCT 419
Query 420 TTCGTGGCGTGATTCAGAACCCTCAAGATTCTCGTAAGAAGATTGAAATTGCAGGT---C 476
||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | |
Sbjct 420 TTCGTGGCGTGATTCAGAACCCTCAAGATTCTCGTAAAAAGATTGATATTGCAGTTAAAC 479
Query 477 A--TAA--AGAATG-GGTG-ACAGAGG--TAAA---TG--T-ACTG-GG-A---GTA--G 515
| | | |||| | ||| |||| || |||| || | || | || | ||| |
Sbjct 480 AACTTAGTAGAA-GAGGTCTACAGGGGCATAAAGAATGGGTGACAGAGGTAAATGTATTG 538
Query 516 ----T-G-G-AGCATCCGAATCTGGTGAAGCTGATCGGTTATTGCGCTGAGGATGATGAG 568
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGAGTAGTGGAGCATCCGAATCTGGTGAAGCTGATCGGTTATTGCGCTGAGGATGATGAG 598
Query 569 AGAGGGATCCAAAGGCTACTTGTTTACGAATACGTACCAAACAGAAGTGTTCAAGACCAT 628
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 AGAGGGATCCAACGGCTACTTGTTTACGAATACGTACAAAACAGAAGTGTTCAAGACCAT 658
Query 629 TTATCCAATCGTTTTATTGTCACTCCTCTCCCTTGGTCCACCAGATTAAAGATTGCTCAG 688
||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct 659 TTATCCAATCGTTTTATAGTCACTCCTCTTCCTTGGTCCACCAGACTGAAGATTGCTCAA 718
Query 689 GACACTGCTCGAGGACTTGCTTATCTTCATGAAGGCATGGAGTTTCAGATCATCTTTAGG 748
||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 GACACTGCTAGAGGACTCGCTTATCTTCATCAAGGCATGGAGTTTCAGATCATCTTTAGG 778
Query 749 GATTTCAAATCCTCCAATATTCTTCTTGATGAGAATTGGAATGCAAAGCTCTCGGATTTC 808
|||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 779 GATTTCAAATCCTCTAATATCCTTCTTGATGAGAACTGGAATGCAAAACTCTCGGATTTC 838
Query 809 GGACTGGCTCGAATGGGTCCTTCTGATGGAATCACTCATGTCTCCACTGCGGTTGTAGGG 868
||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||
Sbjct 839 GGACTGGCTCGAATGGGTCCTTCAGATGGAATCACTCACGTTTCCACCGCGGTTGTAGGG 898
Query 869 ACCATTGGTTATGCAGCACCGGAATATATCCAAACAGGACACCTCACTGCCAAGAGTGAC 928
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||
Sbjct 899 ACCATTGGTTATGCAGCACCGGAATACATCCAAACAGGACACCTCACGGCTAAGAGCGAC 958
Query 929 GTGTGGAGCTACGGAATCTTTCTATATGAACTCATCACAGGAAGACGACCTTTTGACCGT 988
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGTGGAGCTACGGAATCTTTTTATATGAACTCATCACAGGAAGACGACCTTTTGACCGT 1018
Query 989 AACCGCCCAAGAAACGAGCAGAATATCCTGGAGTGGATCAGACCACACTTGTCCGACATA 1048
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 1019 AACCGCCCAAGAAACGAGCAGAACATCTTGGAGTGGATCAGACCACACTTATCCGACATA 1078
Query 1049 AAGAAGTTCAAGATGATCATCGACCCAAGACTTGAAGGAAACTACTACCTCAAATCAGCA 1108
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1079 AAGAAGTTCAAAATGATCATCGACCCAAGACTTGAAGGAAACTACTACCTCAAGTCAGCA 1138
Query 1109 TTGAAGCTAGCTGCAGTTGCTAACCGGTGTTTGATGGTGAAGGCGAAGGCTAGGCCAACA 1168
|| ||||||||||||||||||||||||||||||||||| || ||||| || |||||||||
Sbjct 1139 TTAAAGCTAGCTGCAGTTGCTAACCGGTGTTTGATGGTAAAAGCGAAAGCAAGGCCAACA 1198
Query 1169 ATGAGTCAGGTTTCAGAGATGTTAGAAAGGATAGTGGAAACATCA---GATGATGCTCCT 1225
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1199 ATGAGTCAGGTTTCAGAGATGTTAGAAAGGATAGTGGAAACATCATCAGATGGTGCTCCT 1258
Query 1226 TCAGGACTGCCATTGATGAAGAGCTTGACACCTAAAGCTGCATTCGAGGCCTCAAGAAGA 1285
|||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 1259 TCAGGACTGCCATTGATGAAAAGCTTGACACCTAAAGATGCATTCGAAGCCTCAAGAAGG 1318
Query 1286 GAGAGAGTTAAAAGAAGATTTGTTGAACTTTTGATCGGAGAAAATGGTTGTCCCAATTTA 1345
||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1319 GAGAGAGTTAAGAGAAGATTTGTTGAACTGTTAATTGGAGAAAATGGTTGTCCCAATTTA 1378
Query 1346 CCCACTTGGTCTCCTAAACTTGTTACTTCTACTTGATTTTTT 1387
|| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 1379 CCTACTTGGTCTCATAAACTTGTTACTTCTATTTGATTTTTT 1420
> AT5G35580.1 | Symbols: | Protein kinase superfamily protein
| chr5:13761965-13763944 FORWARD LENGTH=1593
Length=1593
Score = 63.9 bits (34), Expect = 4e-09
Identities = 41/44 (93%), Gaps = 2/44 (5%)
Strand=Plus/Plus
Query 519 AGCATCCGAATCTGGTGAAGCTGATCGGTTATTGC-GCTGAGGA 561
|||||||||||||||||||||||||||| |||||| || |||||
Sbjct 419 AGCATCCGAATCTGGTGAAGCTGATCGGATATTGCTGC-GAGGA 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68322941745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5