BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482933
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39140.1 | Symbols: SVR1 | pseudouridine synthase family pro... 2113 0.0
AT3G43340.1 | Symbols: | Pseudouridine synthase family protein... 322 6e-87
> AT2G39140.1 | Symbols: SVR1 | pseudouridine synthase family protein
| chr2:16330183-16333360 FORWARD LENGTH=1495
Length=1495
Score = 2113 bits (1144), Expect = 0.0
Identities = 1302/1376 (95%), Gaps = 20/1376 (1%)
Strand=Plus/Plus
Query 1 TCGGAAAAACCCAACACACCGTCTCTCTCTCACTCTCAC-TCCCAACGGCGAACATGGCG 59
|||| |||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 2 TCGGGAAAACCCAACACACCGTCTCTCTCTCACTCTCACTTCCCATCGGCGAAAATGGCG 61
Query 60 TCGGTGGCGGCATCATCGCCGATATCATTCGCTGCATCATTCCTCAAAATCAAAGCATtc 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TCGGTGGCGGCATCATCGTCGATATCATTCGCTGCATCATTCCTCAAAATCAAAGCATTC 121
Query 120 cctctctctcctcgcttcttccccatccgtacactccgttgctctgtctcctcctcctcc 179
|||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 122 CCTCTCTCCCCTCGCTTCTTCCCCATCCGTACACTCCGTTGCTCTG--T-CTCCTCCTCC 178
Query 180 tcctctGAGCCCATCGAATTCGACATCTCCTTCGCTCCTCCGAAACCCAAACCCTCCTCC 239
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 TCCTCTGAGCCCATTGAATTCGACATCTCCTTCGCTCCTCCCAAACCCAAACCCTCCTCC 238
Query 240 ACTCGCGGCGGCGCCACCCCTCAACAACTCTTCATCCCTTGGATCGTCCG-AGGTGATGA 298
|||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 239 ACTCACGGCGGCGTCACCCCTCAACAACTCTTCATCCCTTGGATCGTCCGTA-GTGATGA 297
Query 299 CGGCACTCTCAAACTCCAATCTCAACCTCCCGCTCGTTTAATCCACAATCTCGCCATTGA 358
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 298 CGGCACTCTCAAACTCCAATCTCAACCTCCTGCTCGTTTAATCCACAACCTCGCCATCGA 357
Query 359 TGCCACTACTCAAAACCCTAAGAAGAAAGATAAACCTAAGAAGAAACAACCTCAAGCTAC 418
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 TGCCACTACTCAAAACCCTAAGAAGAAAGATAAATCTAAGAAGAAACAACCTCAAGCTA- 416
Query 419 TTCCTCCTCCGCCACCGCTTCCTCCTCAGCCTCCTCTCCAGCTTCACACTCAGAGGTAAA 478
||||||| || |||| || || | ||||| ||||||||||||||||||||||||||
Sbjct 417 --CCTCCTCTTCCTCCGCCACCACCACCGCCTCATCTCCAGCTTCACACTCAGAGGTAAA 474
Query 479 GCCAAAGCTATCCAAAGCGGCGCGTAGGTTTTACAATGAGAATTTCAAAGAACCTCCTCA 538
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 475 GCCAAAGCTATCCAAAGCGGCGCGTAGGTTTTACAATGAGAATTTTAAAGAACAACCTCA 534
Query 539 ACGTTTAAGCAAAGTTCTCGCTGCTGCTGGAGTGGCATCAAGAAGAACCTCTGAAGAACT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ACGTTTAAGCAAAGTTCTCGCTGCTGCTGGAGTGGCATCAAGAAGAACCTCTGAAGAACT 594
Query 599 TATATTTGATGGAAAGGTTACTGTTAATGGTATTCTCTGCACCACTCCACAGACTCGAGT 658
||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 595 TATTTTTGATGGCAAGGTTACTGTTAATGGTATTCTCTGCAACACTCCACAGACTCGAGT 654
Query 659 TGATCCATCAAGAGACATTATTTATGTTAATGGAAATCGTATTCCCAAAAAACTTCCTCC 718
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 655 TGATCCATCAAGAGACATTATTTATGTTAATGGAAATCGTATTCCTAAGAAACTTCCTCC 714
Query 719 AAAGGTTTATTTTGCTCTGAACAAGCCTAAAGGATATATTTGTTCTTCCGGAGAGAAAGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAAGGTTTATTTTGCTCTGAACAAGCCTAAAGGATATATTTGTTCTTCCGGAGAGAAAGA 774
Query 779 TATCAAATCTGTTATTAGTTTGTTTGACGAGTACATGGCCTCTTGGGATAAAAGGAATCC 838
|||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 775 GATCAAATCTGCTATTAGTTTGTTTGACGAGTACTTGTCCTCTTGGGATAAAAGGAATCC 834
Query 839 GGGGATTCCCAAACCTCGTCTTTTTACTGTTGGTCGTCTTGACGTTGCCACAACAGGATT 898
||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 835 GGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATT 894
Query 899 GATAGTTGTTACAAATGATGGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GATAGTTGTTACAAATGATGGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTT 954
Query 959 ACCGAAAGAATATATTACCACGGTTGTCGGTGATATACACAAACGACACTTAATGGCTAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACCGAAAGAATATATTACCACGGTTGTCGGTGATATACACAAACGACACTTAATGGCTAT 1014
Query 1019 CAGCGAAGGCACAGTTGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAGTTGATGCC 1078
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CAGTGAAGGCACAATGGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAGTTGATGCC 1074
Query 1079 AAAGCAGCATGATATACCAAGAGCAAGGCTACGTATTGTGGTTCACGAAGGGAGAAACCA 1138
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 1075 AAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTGGTTCACGAAGGAAGAAATCA 1134
Query 1139 TGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAGCGTATTCG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1135 TGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAGCGTGTCCG 1194
Query 1199 TATAGGTGGATTCAGACTTCCTTCAGATCTTGGGCTAGGGAAGCATGTGGAGTTGAAGCA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1195 TATAGGTGGATTCAGACTTCCTTCAGATCTTGGGCTAGGGAAGCATGTGGAATTGAAGCA 1254
Query 1259 GAGCGAGCTAAAGGCAATGGGTTGGAAGAATTGAAGATGTGCCATTT-ATCAAACAATTA 1317
|||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 1255 GAGCGAGCTAAAGGCATTGGGTTGGAAGAATTGAAGATGT-CCAATTCATCAAACAATTA 1313
Query 1318 AAA-C-TCTGTTACCATTAGAAGaaaaaaaaaaCAGAATATAATTGTTTAGTTTAT 1371
||| | ||||||||| |||| |||| |||||||||||||||||| ||||
Sbjct 1314 AAAACCTCTGTTACCTTTAGTT-AAAA------CAGAATATAATTGTTTAGATTAT 1362
> AT3G43340.1 | Symbols: | Pseudouridine synthase family protein
| chr3:15284861-15285851 REVERSE LENGTH=225
Length=225
Score = 322 bits (174), Expect = 6e-87
Identities = 206/222 (93%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1011 ATGGCTATCAGCGAAGGCACAGTTGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAG 1070
||||| ||||| ||||||||| | ||||||||| |||||||||||||||||| |||||||
Sbjct 1 ATGGCAATCAGTGAAGGCACAATGGTGGAAGGAATCCACTGTGTCCCAGATTTAGTTGAG 60
Query 1071 TTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTACGTATTGTGGTTCACGAAGGG 1130
||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 61 TTGATGCCAAAGCAGCATGATATACCAAGAGCATGGCTGCGTATAGTGGTTCACGAAGGA 120
Query 1131 AGAAACCATGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAG 1190
||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 121 AGAAATCATGAAGTCAGGGAATTAGTGAAAAATGTTGGGCTTGAGGTTGATTCATTGAAG 180
Query 1191 CGTATTCGTATAGGTGGATTCAGACTTCCTTCAGATCTTGGG 1232
||| | |||||||||||| |||||||||||||||||||||||
Sbjct 181 CGTGTCCGTATAGGTGGAGTCAGACTTCCTTCAGATCTTGGG 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5