BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482935
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39170.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1450 0.0
> AT2G39170.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320);
Has 57 Blast hits to 57 proteins in 26 species: Archae -
0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16334630-16336210
REVERSE LENGTH=955
Length=955
Score = 1450 bits (785), Expect = 0.0
Identities = 901/955 (94%), Gaps = 16/955 (2%)
Strand=Plus/Plus
Query 2 TTTTTC-TTTTGGGAACCCGTGATCAAATGATAGGAGGAACAAATCAGGAGAGACACAAT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TTTTTCTTTTTGGGAACCCGTGATCAAATGATAGGAGGAACAAATCAGGAGAGACACAAT 71
Query 61 TCTTTATTGACAGAGAAATTGATAATCGAAGAACCCAATTACCACCGATTCTCCTCTTTT 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 72 TCTTTATTGACAGAGAAATTGATAATCGAAGAACCCTATTACCACCGATTCTCCTCTTTT 131
Query 121 CTCTCTGCTTCGTCGTCATCTAGGGTTTCCTAATGCATGAGTTCTCTACTGTTGATGGTT 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CTCTCTGTTTCGTCGTCATCTAGGGTTTCCTAATGCATGAGTTCTCTACTGTTGATGGTT 191
Query 181 TTGCGGAGATAAACGAGAGCTTAGCCGAGATGATAAAATACATTGCAAATGAACCCTCAG 240
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 192 TTGCGGAGATAAACGAGAGCTTAGCGGAGATGATAAAGTACATTGCAAATGAACCCTCAG 251
Query 241 TGGGGCTTTACTACATCCAACAGCATGTCCGAAACGCAGCACCGAATGTTCTTAATCTCA 300
|||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 252 TGGGGCTTTACTACATTCAACAGCACATCCGAAACGCAGCACCGAATGTTATTAATCTCA 311
Query 301 ACAACAACGTTTTGGAGAAGTCACGTGAAACAGGCTTGCATACCGAAGACTTGGATGATT 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 312 ACAACAACGTTTTGGAGAAGTCCCGTGAAACAGGCTTGCATACCGAAGACTTGGAAGATT 371
Query 361 CTATAGCCATGGTGAAATCTATGAAAGAGTGTGGTTCACCTATTGCTGATGAGATGATAG 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 372 CTATAGCCATGGTGAAATCTATGAAAGACTGTGGTTCACCTATTGCTGATGAGATGATAG 431
Query 421 GAGACATCAAGAACTCTTTAGCGATAATGTCTTCGAAACAACCGAGAAGAGGGGTCATCC 480
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 432 GAGACATTAAGAACTCTTTAGCGATAATGTCTTCGAAACAACCGAGGAGAGGGGTCATCC 491
Query 481 TCAACTCCACAAACCCATGGAGCAGATCCAGCAGTATAACAACAACAACGCGTGGTTCTG 540
|||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 492 TCAACTCCACAAGTCCTTGGAGCAGATCCAGCAGTATAACAACAAGAACGCGTGGTTCTG 551
Query 541 ATTACAGCCAGGATAATAGTGAAAGCAGCAACTATTTCACATCAGTCTTCAAGACGGCTA 600
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 552 ATAACAGCCAGGATAATAGTGAAAGCAGCAACTATTTCACATCAGTCTTCATGACGGCTA 611
Query 601 AGGAGAAGGCAAGCAACATCAAATGGCCACAACTTGATTTCAAAGAACAGAAGTCAGAGG 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 612 AGGAGAAGGCAAGCAACATCAAATGGCCACAACTTGATTTCAAAGAACAAAAGTCAGAGG 671
Query 661 TTGACCCCAATGTGCAAAGCAATGAGTTAAaagaagaagaagaagaagTCTCAGTGAAAG 720
||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 672 CTGACCCCAATGTGCAAAGCAATGAGTTAAAAGAAGAAGAAGAAGAGGACTCAGGGAAAG 731
Query 721 GTGAACATATTGTGGAGACGACAAAGTTTGAGGAGTTCAAGGCAGGTAAAGAAGCGAGTC 780
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GTGAACATATTGTGGAGACAACAAAGTTTGAGGAGTTCAAGGCAGGTAAAGAAGCGAGTC 791
Query 781 TCAAGGCATGGCTTGGAGATATGGATGGGAATGTGGATGTTGGTGGACGTGTTGCCGAGA 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 792 TCAAGGCATGGCTTGGAGATATGGATGGGAATGTGGATGTTGGTGGTCGTGTTGCCGAGA 851
Query 841 GGATTTAGttttttttttttttttCATTAATGTCGTTGTTGT---GGTT-ACTGCTTATT 896
| |||||| | |||||| ||||||||||| ||| || || ||||||||||
Sbjct 852 GAATTTAGATGTTTTTT-------CATTAATGTCGCTGTGGTTACGGGAGACTGCTTATT 904
Query 897 TATGTAAATTATTCACTTTGGTCTCATAGAGAAAAAGAGTTAAAATTTTGAGTTT 951
||||||||| |||||||| | || ||| |||||||||||||||||||| |||
Sbjct 905 TATGTAAATCATTCACTTA---CACAGAGA-AAAAAGAGTTAAAATTTTGACTTT 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5