BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482936
Length=2441
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39180.1 | Symbols: CCR2, ATCRR2 | CRINKLY4 related 2 | chr2... 3893 0.0
> AT2G39180.1 | Symbols: CCR2, ATCRR2 | CRINKLY4 related 2 | chr2:16344151-16346665
REVERSE LENGTH=2515
Length=2515
Score = 3893 bits (2108), Expect = 0.0
Identities = 2336/2447 (95%), Gaps = 11/2447 (0%)
Strand=Plus/Plus
Query 1 ATGCAACCCAATTC-C-CA-CTTCTTCTTCTTCACCATTTCATCACTCATCATTACTGTT 57
|||||||||||||| | || |||| || || ||||||||||||||||||||||||| |||
Sbjct 58 ATGCAACCCAATTCTCACATCTTCGTCATCATCACCATTTCATCACTCATCATTACAGTT 117
Query 58 TCTGGGTATGGCTCAACAGGCACAATCGCAGCAGCTTTTGGCGAAAACGGATTCTTCTGC 117
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 TCTGCGTATGGCTCAACAGGCACAATCGCAGCAGCTTTCGGCGAAAACGGATTCTTCTGC 177
Query 118 GCCATTGACGCAAGTGGGAAGCAAGAAGCCATCTGTTGGGATAGAGGAAACACTAACCGA 177
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 GCCATTGACGCAAGTGGGAAGCAAGAAGTCATCTGTTGGGATAGAGGAAACACTAACCGA 237
Query 178 TCTTTAAACCGACCACCC-GGTGAAATCTCCGGTTATTCTCCTCCAATGACTTCACTTTC 236
|| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 TCATTAAACCGACC-CCCAGGTGAAATCTCCGGTTATTCTCCTCCAATGACTTCTCTTTC 296
Query 237 CGGTGGTGAAGGTTTTCTCTGCGCCATTACGTCGAACACTTCGCGTGCGTTTTGTTGGAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGGTGGTGAAGGTTTTCTCTGCGCCATTACGTCGAACACTTCGCGTGCGTTTTGTTGGAA 356
Query 297 CCTTGAAGATCCTTCTGAGAATCTCGTTCCTCGAGCTTTTCAGTATAATTCTTACTTACA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCTTGAAGATCCTTCTGAGAATCTCGTTCCTCGAGCTTTTCAGTATAATTCTTACTTACA 416
Query 357 GATTGCTTCTGGTAGCAATCATGTTTGTGCTATAAGTGGATTGTACTATTCAGGTCCTGA 416
|||||||||||||| |||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 417 GATTGCTTCTGGTAACAATCATGTTTGTGCTATTAGTGGATTGTATTACTCAGGTCCTGA 476
Query 417 TTATGGTCCTGTTCATTGTTGGGAGTATAGTGATAACACTAATTTCACTTCTGGTCTTCT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTATGGTCCTGTTCATTGTTGGGAGTATAGTGATAACACTAATTTCACTTCTGGTCTTCT 536
Query 477 TTGGAATTCTTCTTTTCATAATCCTTATATAGATAGTCTCATGTTTCGTAAGATTGTTTC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTGGAATTCTTCTTTTCATAATCCTTATATAGATAGTCTCATGTTTCGTAAGATTGTTTC 596
Query 537 TGGAGATGGGTTTTCTTGTGGTGTTACTAAAGATGGAGACTTGGTTTGTTGGGGACCAAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGGAGATGGGTTTTCTTGTGGTGTTACTAAAGATGGAGACTTGGTTTGTTGGGGACCAAA 656
Query 597 ATCAAACCTTTTGAATTTCTCCAATAATGAAGAATTCGAGGTTTTAGCTTCTGGGAGGAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATCAAACCTTTTGAATTTCTCCAATAATGAAGAATTCGAGGTTTTAGCTTCTGGGAGGAA 716
Query 657 CTCTGTTTGTGGTGTCTCTAAAGATTCAGGTCAACTTCAATGCTTTGGAGATGAAACAGA 716
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 CTCTGTTTGTGGTGTCTCTAAAGATTCAGGTCAACTTCATTGCTTTGGAGATGAAACAGA 776
Query 717 GTTTGGTGT-GTTACCGAACCGGCCTCGGTTTATCGCGCTTTCAGCTGGTGCTAATCATT 775
||||||| | |||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 777 GTTTGGT-TCGTTACCAAACCGGCCTCGGTTTATTGCTCTTTCAGCTGGTGCTAATCATT 835
Query 776 ATTGTGGTATCCGTGAGGATGATCATGGGGTTGAGTGTTGGGGAAGAAACTTGAATTCTT 835
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 836 ATTGTGGTATACGTGAGGATGATCATGGAGTTGAGTGTTGGGGAAGGAACTTGAATTCTT 895
Query 836 CGTCGTCAGCTTCAGCTCCTAATACTTCCGGGTTTGTGGCGATTTCGTCTTCGGATTCTA 895
| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 896 CTTCATCATCTTCAGCTCCTAATACTTCAGGGTTTGTGGCGATTTCGTCTTCGGATTCAA 955
Query 896 CAACTTGTGGAGTTAGAGAGCTTGATTTGGTTCTTGATTGTTGGAGAGTTCATGATTCTT 955
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 956 CAACTTGTGGAGTTAGAGAGCTTGATTTAGTTCTTGATTGTTGGAGAGTTCATGATTCTT 1015
Query 956 CGAAAGCGGATTATAGTCCTCCTTTGGAGTTATGTAGCCCCGGGATGTGTTCGCCTCGCG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CGAAAGCGGATTATAGTCCTCCTTTGGAGTTATGTAGCCCCGGGATGTGTTCGCCTCGCG 1075
Query 1016 GTAATTGTGGTGATGGCTGGTTTGCTTTCAATGCAAGTATCTTGAAAGAATCTGAGCTCA 1075
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1076 GTAATTGTGGTGATGGTTGGTTTGCTTTCAATGCAAGTATCTTGAAAGAATCTGAGCTTA 1135
Query 1076 CGAGCTTGTGCTCGTTTCATAACCTCAACATTTGCTTACGCTGTGGAATCAGTTGCTTGG 1135
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1136 CTAGCTTGTGCTCGTTTCATAACCTCAACATTTGTTTACGTTGTGGAATCAGTTGCTTGG 1195
Query 1136 AAGGCTATTTTCCTTCCAGTACTTGTAATCCAAATGCGGACCGGGTCTGTACTCCTTGTT 1195
|||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1196 AAGGGTATTTCCCTTCCAGCACTTGTAATCCAAACGCGGACCGGGTCTGTACTCCTTGTT 1255
Query 1196 CACTATGTCAGAACAGTTCTTGTTACGGTATCTGTAAGATTCGGGTTGCGAAATCGAAAG 1255
| ||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 1256 CGCTATGTCAGAATAGTTCTTGTTACGGTATCTGTAAGATTCGGGCTACGAAATCGAAGG 1315
Query 1256 AGCACGAGCAGAAAGAGCAGAGAGAGGTACGGAGATTGGTGATCATCATAGGGTGCTCTG 1315
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGCATGAGCAGAAAGAGCAGAGAGAGGTACGGAGATTGGTGATCATCATAGGGTGCTCTG 1375
Query 1316 TTTTAGGGTTCTTGGTGATGTTGATCGGTTTGTCTTTCATTCCAAAGATGACAAAAGATA 1375
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1376 TTTTAGGGTTCTTGGTGATGTTGATTGGTTTGTCTTTCATTCCAAAGATGACAAAAGGTA 1435
Query 1376 GTAAAAGAGATGATGAAGAGAGAAGCAAAATGACTTGTTGCTTCTGTTTCGATAAGAATT 1435
||||| |||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1436 GTAAACGAGATGATGAAGAGAGGAGTAAGATGACTTGTTGCTTCTGTTTCGATAAGAATT 1495
Query 1436 CTGTCGAAGCTGATCCTGATCCCGTCCCTCA---GTCAGTTCTTCTACCAACCGCTGTAT 1492
|||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 1496 CTGTAGAAGCTGATCCTGATCCTGTCCCTCATCAGTCGGTTCTTCTACCAACCGCTGTAT 1555
Query 1493 CTCTGGGGGAGACCAAAATCTTCCGTCTTTCGGAGCTCAAAGATGCGACTCACGGGTTCA 1552
|||| ||||| ||||| ||||||||||| || || || ||||| ||||||||||||||||
Sbjct 1556 CTCTCGGGGAAACCAAGATCTTCCGTCTATCAGAACTTAAAGACGCGACTCACGGGTTCA 1615
Query 1553 AAGAATTCAACGAGCTCGGAAGGGGTAGCTTCGGGTTTGTTTACAAAGCTGTTTTGTCTG 1612
||||||||||||||||||| || ||||||||||||||||| || ||||||||||| ||||
Sbjct 1616 AAGAATTCAACGAGCTCGGGAGAGGTAGCTTCGGGTTTGTCTATAAAGCTGTTTTATCTG 1675
Query 1613 ATGGGATACATGTTGCGGTCAAAAGAGCGAATGCTGCAACGATCATTCACTCTAATAACC 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 ATGGGATACATGTTGCGGTCAAAAGAGCGAATGCTGCAACGATCATTCACTCTAATAACC 1735
Query 1673 GAGGTTTCGAGTCGGAGCTAGAGATTCTTTGCAAAATCAGACACAACAATATTGTGAATT 1732
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GAGGTTTCGAGTCCGAGCTAGAGATTCTTTGCAAAATCAGACACAACAATATTGTGAATT 1795
Query 1733 TGTTAGGATATTGCTCGGAGATGGGGGAACGGCTTTTGGTTTATGAGTACATGCCGCACG 1792
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1796 TGTTAGGATACTGCTCAGAGATGGGGGAAAGGCTTTTGGTTTATGAGTACATGCCGCACG 1855
Query 1793 GTACGCTCCATGATCATCTCCATGGAGATCTTTCACAACTGGATTGGAGCATGAGATTGA 1852
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1856 GTACGCTTCATGATCATCTCCATGGAGATCTTTCACAACTGGACTGGAGCATGAGACTGA 1915
Query 1853 AGATCATGTTGCAGGCTGCAAGAGGACTTGATTACTTACACAACGAAGTAGATCCTCCAA 1912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1916 AGATCATGTTGCAGGCTGCAAGAGGACTTGATTACTTACACAACGAAGTAGATCCTCCGA 1975
Query 1913 TAATTCATAGAGATGTGAAAACGTCCAACATCTTGTTAGACGGTGAAATGTGCGCAAGAA 1972
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TAATTCACAGAGATGTGAAAACGTCCAACATCTTGTTAGACGGTGAAATGTGCGCAAGAA 2035
Query 1973 TAGCGGATTTCGGATTGGTAAGCTCGAATGAAAGGGATTCAAGCAATAGTGATAGAGAAG 2032
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TTGCGGATTTCGGATTGGTAAGCTCGAATGAAAGGGATTCAAGCAATAGTGATAGAGAAG 2095
Query 2033 GTGATGTGTATGACTTTGGTATTGTGCTTCTTGAGATACTAAGCGGGCGAAAAGCTATCG 2092
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2096 GTGATGTGTATGACTTTGGTATTGTTCTACTTGAGATACTAAGCGGGCGAAAAGCTATCG 2155
Query 2093 ATAGAGAATCTGATCCTCCCGGAATTGCGGAATGGGCGGTTCCATTGATCAGGAAAGGAA 2152
||||||| ||||||||| | || |||||||||||||||||||| ||||||||||||||||
Sbjct 2156 ATAGAGAGTCTGATCCTGCGGGGATTGCGGAATGGGCGGTTCCTTTGATCAGGAAAGGAA 2215
Query 2153 AAGCAGCGGCGATTATCGATAGGAACATTGGTTTGCCAAGAAATGTAGAGCCTTTGCTTA 2212
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2216 AAGCAGCGGCGATAATCGATAGGAACATTTGTTTGCCAAGAAATGTAGAGCCTTTGCTTA 2275
Query 2213 AATTGGCTGAATTAGCTGAGCTTGCTGTGAGGGAACACCCCAACGAACGACCCAATATCA 2272
|||||||||| |||||||||||||||||||||||| | | || |||||||| |||||||
Sbjct 2276 AATTGGCTGAGTTAGCTGAGCTTGCTGTGAGGGAAAATTCGAATGAACGACCAAATATCA 2335
Query 2273 AAAATATTCTGAGTTTTCTTGATCTCATCGTCAAGTCTGGACTCACCTTTTA-GTTGCTG 2331
|||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2336 GAAATATTCTGTGTTTTCTTGATCTCATCGTCAAGTCTGGCCTCACTTTTTAAGTTGCTG 2395
Query 2332 AAGCCTCTCAAAATGTGAAATATATTCAGCATTGTTTTTATTTCTCCTTATAAATTGTAT 2391
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 2396 AAGCCTCTCAAAATGTGAAATATATTCAGCATTGTTTTTGTTTCTCCTTACAAATTGTAT 2455
Query 2392 GATAAATTGATTATCAAAGTAATAAACCCACAGATTTGTTTGTCAAA 2438
|||||||||||| ||||||||||||| ||| ||||||||| |||||
Sbjct 2456 GATAAATTGATTGTCAAAGTAATAAAAACACGGATTTGTTTTTCAAA 2502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121234316175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5