BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482946
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39270.1 | Symbols: | P-loop containing nucleoside triphosp... 1724 0.0
AT2G39280.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 226 4e-58
> AT2G39270.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16399972-16401671
FORWARD LENGTH=1162
Length=1162
Score = 1724 bits (933), Expect = 0.0
Identities = 1098/1176 (93%), Gaps = 18/1176 (2%)
Strand=Plus/Plus
Query 1 TTCTTCTCTCCATGGCGGTTTCTCACCGTCTCTTCAGGCCGGCGACGACGATGGCGAAGA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 1 TTCTTCTCTCCATGGCGGTTTCTCACCGTCTCCTCAGGCCGGCGACGACGACGATAAAGA 60
Query 61 ATACtctttcttctttcttaattaggtctatttcttcttcttcctcttcttcgtctGGGT 120
||||| |||||||| |||| |||||||| || || || | ||||||||||||||||
Sbjct 61 ATACTTTTTCTTCTCTCTTTATTAGGTC----TC-TC-TC-T--TCTTCTTCGTCTGGGT 111
Query 121 CCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCCGCGTCTCAGCTCGAGAAGTCTACGT 180
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||| | | |
Sbjct 112 CCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCTGCGGCTCAGCTCGGGAAG--T-C-T 167
Query 181 CTACGTCTCCGTCTCCGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGAT 240
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 -T-CGTCTACGTCAACGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGAT 225
Query 241 GTCCTGGTGTTGGTAAAGGAACGTATGCTTCACGTCTCTCTTCTCTCCTCGGCGTTCCTC 300
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 226 GTCCTGGTGTTGGTAAAGGAACCTATGCCTCTCGTCTCTCTTCTCTCCTCGGCGTTCCTC 285
Query 301 ATATTGCCACTGGTGATCTCGTTCGTGAAGAGctctcctcctctggcctcctctcctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ATATTGCCACTGGTGATCTCGTTCGTGAAGAGCTCTCCTCCTCTGGCCTCCTCTCCTCTC 345
Query 361 AGCTGAAGGAGCTTGTTAACCATGGGAAATTGGTTCCTGATGAATTCATAATAAGTTTGT 420
|||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 346 AGCTCAAGGAGCTTGTTAACCATGGAAAACTAGTTCCTGATGAATTCATAATAAGTTTGT 405
Query 421 TATCAAAGCGTCTCCAAGCTGGCAAAGAGAAGGGTGAATCTGGATACATTCTTGATGGTT 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 406 TATCAAAGCGTCTCCAAGCTGGCAAAGACAAGGGTGAATCTGGATACATTCTTGATGGTT 465
Query 481 TTCCACGAACCGTGACACAAGCGGAAATACTGGAGGGGGTAACTAATATCGATCTGGTGA 540
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 466 TTCCACGCACCGTGACTCAAGCGGAAATACTGGAGGGAGTAACTAATATCGATCTGGTGA 525
Query 541 TCAACCTGAAGCTTCGAGAAGAGGCACTACTTGCCAAATGTTTAGGAAGAAGAATTTGCA 600
| ||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 526 TTAACCTGAAGCTACGAGAAGAGGCATTGCTTGCGAAATGTTTAGGAAGAAGAATTTGCA 585
Query 601 GTGAGTGTGGTGCAAACTATAACGTTGCGTGCATTGATATCGAAGGTGATGATGATAGTC 660
| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 586 GCGAGTGTGGTGGAAACTATAACGTTGCCTGCATTGATATCAAAGGTGATGATGATACTC 645
Query 661 CCAGAATGTACATGCCTCCTCTTCTTCCTCCGCCAAACTGTGCATCGAAGCTTATAAGCC 720
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 646 CCAGAATGTATATGCCTCCTCTTCTTCCTCCGCCAAACTGTGAATCGAAGCTTATAAGCC 705
Query 721 GAGCTGATGACACCGAAGACGTTGTCAAGGAAAGACTCCGGATTTACAACAAAATGACTC 780
||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 706 GAGCTGATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATGACTC 765
Query 781 TACCAGTGGAGGAATTCTACAAGAAGCGCAGGAAGCTATTGGAATTTGAATTACCCGGTG 840
|||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||
Sbjct 766 AACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTTGAATTGCCCGGTG 825
Query 841 GAATTCCAGAGTCATGGCCAAGGCTCCTTAGAGCATTACACCTTGAAAACGATAAACAGT 900
|||| |||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 826 GAATCCCAGAGTCATGGGCAAGGCTCCTTAGGGCATTACACCTTGAAGACGATAAACAGT 885
Query 901 CTGCAATAGCCTAATTTCTCTCGGCATTGTATGATTGAATCAAACAGCTTGTACTACATT 960
||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 886 CTGCAATAGCCTAATCTCTCTCTGCATTTTATGATTGAATCAAACAACTTGTACTACATT 945
Query 961 CTTTGCTCGAGTAATCCTCCTCGTGCATATATGCTTAAGATAGTCAATAAAAGAGATACA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CTTTGCTCGAGTAATCCTCCTCGTGCATATATGCTTAAGATAGTCAATAAAAGAGATACA 1005
Query 1021 TGTCCCTTTGTGGTTATTTGATGCATATATTATATAGTAAAGTTTCTTTGTGGATTCTGG 1080
|||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1006 TGTCCCACTATGGTTATTTGATGCATATATTATATAGTGAAGTTTCTTTGTGGCTTCTGG 1065
Query 1081 TCCACTATAGATAGTTGAAAACTCTTTGTCATACAAACAGAGGTTTGACTTACAACGAAT 1140
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1066 TCCACTATAGATAGTTGAAAACTCTTTGTCATA-A--CAGAGGTTTGACTTACAACGAAT 1122
Query 1141 TGTTTCTATATGCTTACCaaaaaaaTTATGTAATTC 1176
||||| ||||||||||||||| ||||||||||||||
Sbjct 1123 TGTTTATATATGCTTACCAAAGAAATTATGTAATTC 1158
> AT2G39280.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr2:16401526-16406854 REVERSE LENGTH=2846
Length=2846
Score = 226 bits (122), Expect = 4e-58
Identities = 138/145 (95%), Gaps = 3/145 (2%)
Strand=Plus/Minus
Query 1032 GGTTATTTGATGCATATATTATATAGTAAAGTTTCTTTGTGGATTCTGGTCCACTATAGA 1091
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 2846 GGTTATTTGATGCATATATTATATAGTGAAGTTTCTTTGTGGCTTCTGGTCCACTATAGA 2787
Query 1092 TAGTTGAAAACTCTTTGTCATACAAACAGAGGTTTGACTTACAACGAATTGTTTCTATAT 1151
|||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 2786 TAGTTGAAAACTCTTTGTCATA-A--CAGAGGTTTGACTTACAACGAATTGTTTATATAT 2730
Query 1152 GCTTACCaaaaaaaTTATGTAATTC 1176
|||||||||| ||||||||||||||
Sbjct 2729 GCTTACCAAAGAAATTATGTAATTC 2705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5