BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482952
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39320.1 | Symbols: | Cysteine proteinases superfamily prot... 645 0.0
AT5G03330.1 | Symbols: | Cysteine proteinases superfamily prot... 89.8 3e-17
> AT2G39320.1 | Symbols: | Cysteine proteinases superfamily protein
| chr2:16417477-16418517 REVERSE LENGTH=685
Length=685
Score = 645 bits (349), Expect = 0.0
Identities = 497/565 (88%), Gaps = 23/565 (4%)
Strand=Plus/Plus
Query 30 GATGAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTAGCTGATCAACTTTATCAAACCTC 89
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 3 GATGAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTGGCGGATCAACTTTATCAAAATTC 62
Query 90 GGATAGTCATAAACGTGTTAGACAAGAAATCGTAAATCAGAA--T---AT-GTCCACTAA 143
|||| ||||| ||| ||||||||||||||||||||| ||||| | || |||||||||
Sbjct 63 GGATTGTCATGAACTTGTTAGACAAGAAATCGTAAAACAGAACATGTCATTGTCCACTAA 122
Query 144 CTCCGAATGGGGCGATGAAGTCACATTGAGAGTCGCTGCTGATGTATATGGAGTAAAAAT 203
||| |||||||||||||||| || |||||||| ||||||||||| ||| |||||||||
Sbjct 123 TTCCCAATGGGGCGATGAAGTGACTTTGAGAGTGGCTGCTGATGTGTATCAAGTAAAAAT 182
Query 204 AGTACTCATTACATCAATCAAACTTACTCCATTCATGGAGTTTTTGCCCAAGTCTCAAAA 263
| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 183 AATACTCATTACATCAATCAAACTTATTCCATTTATGGAGTTTTTGCCCAAGTCTCAAAA 242
Query 264 AGAACCCGACAGAGTCATTCATTTGAGCTATCTCGCAGGGATCCATTTCAACTCCATCCA 323
||||| |||| |||||||||| |||||||||| || ||||||||||||||||||||| |
Sbjct 243 GGAACCGGACAAAGTCATTCATATGAGCTATCTAGCTGGGATCCATTTCAACTCCATCTA 302
Query 324 Caaaaaaa-----GA----GGTTCAGGTTTATCTTCATCATCTG-GTTCTGCA-TC-G-A 370
|||||||| || |||||| ||| |||||||||||| | |||||||| || | |
Sbjct 303 CAAAAAAAATAAAGAAAAAGGTTCACGTTCATCTTCATCATC-GAGTTCTGCAGTCTGGA 361
Query 371 TGAAGCTACagaggaagaaggagaaggaggcgaagaaaatggaggaggaggagaaggaaa 430
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 362 TGAAGCTACAGAGGAAGAAGGAGAATGAGGCGAAGAAAAAGGAGGAGGAGGAGAAGGAAA 421
Query 431 ggaaggagaaggagaaggaggagaagaaaaaagagaaggaggagaagaaaaaggacaagg 490
||||||| | ||||||||||||||||||||| || |||||||| ||||| ||||| ||||
Sbjct 422 GGAAGGACATGGAGAAGGAGGAGAAGAAAAAGGACAAGGAGGATAAGAAGAAGGATAAGG 481
Query 491 aggataagaagaaggcgaagg--c-gaaggtgaaaaaggagaagaatgagaagaagaaca 547
||||||||||||| || |||| | ||| | ||| ||||||||||| |||||||||||||
Sbjct 482 AGGATAAGAAGAAAGCCAAGGTGCAGAAAGAGAAGAAGGAGAAGAAGGAGAAGAAGAACA 541
Query 548 gaaaTCACCATTTTCACTTTTCTGA 572
|||||||||| ||||||| ||||||
Sbjct 542 GAAATCACCACTTTCACTATTCTGA 566
> AT5G03330.1 | Symbols: | Cysteine proteinases superfamily protein
| chr5:806964-809779 FORWARD LENGTH=1537
Length=1537
Score = 89.8 bits (48), Expect = 3e-17
Identities = 77/91 (85%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 40 GATGGAAATTGCCAGTTCCGTGCTTTAGCTGATCAACTTTATCAAA-CCTCGGATAGTCA 98
||||| |||||||||||||||||||||||||||||||| || |||| || | ||| | ||
Sbjct 956 GATGGTAATTGCCAGTTCCGTGCTTTAGCTGATCAACTGTA-CAAAACCGCAGATCGCCA 1014
Query 99 TAAACGTGTTAGACAAGAAATCGTAAATCAG 129
||||| |||| ||| | |||| ||||| |||
Sbjct 1015 TAAACATGTTCGACGACAAATAGTAAAACAG 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5