BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482956
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1674 0.0
> AT2G39370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G37380.1);
Has 184 Blast hits to 178 proteins in 53 species: Archae -
0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses
- 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:16444130-16445266
REVERSE LENGTH=1137
Length=1137
Score = 1674 bits (906), Expect = 0.0
Identities = 1040/1103 (94%), Gaps = 15/1103 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTTATCTAGAGCGATGCGACAGTGTAGAAGAAGATTACATTGACATGGAAGTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCGGCTTATCTAGAGCGATGCGACAGTGTAGAAGAAGATTACATTGATATGGAAGTA 60
Query 61 ACTTCTTTCACAAACCTCGTACGCAAAACTCTGAACAACAACTACCCTCGAGAGTTCGAG 120
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 61 ACTTCTTTCACAAACCTCGTACGTAAAACTCTGAGCAACAACTACCCTCGAGAGTTCGAG 120
Query 121 TTCCAAATGTCTCATCTTTGTCCTCTCGAGATAGACAAAACCACTTCTCCC-GCAGACGA 179
|||||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||
Sbjct 121 TTCCAAATGTCTCATCTTTGTCCTCTTGAGATAGACAAAACCACTTC-CCCTGCGGACGA 179
Query 180 ACTCTTCTACAAAGGCAAGCTTCTCCCTCTTCACTTACCTCCTCGTCTCCAAATGGTCCA 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 ACTCTTCTACAAAGGCAAGCTTCTCCCTCTTCACTTACCTCCACGTCTCCAAATGGTCCA 239
Query 240 AAAGATTCTAGAAGATTACACCTTCGACGACGAATTCTACAGCACTCCTTTAGCCACTGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AAAGATTCTAGAAGATTACACCTTCGACGACGAATTCTACAGCACTCCTTTAGCCACCGG 299
Query 300 AACGGTTACAACTCCGGTGACGAGCAACACTCCGTTCGAGTCCTGCACCGTCTCTCCGGC 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AACGGTTACAACTCCAGTGACGAGCAACACTCCGTTCGAGTCCTGCACCGTCTCTCCGGC 359
Query 360 AGATTCTTGCCAAGTGAGTAAAGAGCTTAACCCTGAAGACTATTTCCTTGAATATCCTGA 419
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||
Sbjct 360 AGAGTCTTGCCAAGTGAGTAAAGAGCTTAACCCTGAAGACTACTTCCTAGAATATTCAGA 419
Query 420 CTCATTGGGGGAGGAGGATGAGAAGAAGAAACCTTGGACCACGAAACTGAGATTGATGAA 479
||||||| |||||| ||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 420 TTCATTGGAGGAGGACGATGAGAAGAAGAAATCTTGGACCACGAAACTAAGATTGATGAA 479
Query 480 GCAATCAAGTCTTGGAACGAAGATTAAAGCTTCGAGAGCGTATCTTAGATCTTTCTTTGG 539
||| |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 480 GCAGTCAAGTCTCGGAACGAAGATTAAAGCTTCGAGAGCTTATCTAAGATCGTTCTTTGG 539
Query 540 TAAAACAAGTTGTTCTGATGAGTCATCATGCGCGTCTTCCGCTGCAAGAGTTGCAGACGA 599
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 TAAGACAAGTTGTTCTGATGAGTCATCATGCGCGTCTTCCGCTGCGAGAGTTGCAGACGA 599
Query 600 AGATTCGGTTTTGAGGTATTCGCGAGTGAAGCCTTTTGGACAAATCAAAACAGAGAGACC 659
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 600 AGATTCGGTTTTGAGGTATTCGCGAGTAAAGCCTTTTGGACAGATCAAAACAGAGAGACC 659
Query 660 TAAAAAACAGAGTAATAGTTCTGTTTCCGGGAGCCATAGGAGATCGTTTTCAGTTTCTAT 719
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 660 TAAAAAACAGAGTAATGGTTCTGTTTCCGGAAGCCATAGGAGATCATTTTCAGTTTCTAT 719
Query 720 GAGGAGACAAGCTGCAAAGAGTTCGAACAACAAATCATCGAGTAGTTTAGGGTTTCGTCC 779
|||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 720 GAGGAGGCAAGCTGCCAAGAGTTCTAACAACAAATCATCGAATAGTTTAGGGTTTCGTCC 779
Query 780 GCTGCAGTTTTTGAAGAGAAGTACGAGTTCGAGTTCTGAGATAGAGAATTCTATCCAGGG 839
| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 780 GTTGCAGTTTTTGAAGAGAAGTACGAGTTCGAGTTCTGAAATTGAGAATTCTATCCAAGG 839
Query 840 AGCTATCTTGCATTGCAAGCAATCACATCAGCAGAAGCAGAAACAG------TATAGT-- 891
||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 840 AGCTATCTTGCATTGCAAGCAATCACAGCAGCAGAAGCAGAAACAGAAACAGTATAGTAC 899
Query 892 -GTTAATGAGGTCGGATTCTGTTCGTCGTCAGCTTCAAGAATCGCAGCTAGGGATGATCA 950
||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 900 TGTTAACGAGGTCGGATTCTGTTCGTTGTCAGCGTCAAGAATCGCAGCTAGGGATGATCA 959
Query 951 AGAACGGGCTCAGATGTTTAGGGGCTAACTAAAGATATCGGACATGCAGAAA-TATAAGA 1009
|||| |||||||||||||||||||||||||||||||||||| |||| ||||| | |||||
Sbjct 960 AGAATGGGCTCAGATGTTTAGGGGCTAACTAAAGATATCGGTCATGAAGAAAGT-TAAGA 1018
Query 1010 AGGAAATAAGAGTTGAGTGAGAGAGTGAGAGAACTAGAGAATAAAttctttgttttcttt 1069
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1019 AGGAAATAAGAGTTGAGCGAGAG--TGAGAGAACTAGAGAATAAATTCTTTGTTTTCTTT 1076
Query 1070 ttattttgcttcttctttgtttt 1092
|||||||| |||||||||||||
Sbjct 1077 GTATTTTGCCTCTTCTTTGTTTT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5