BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482957
Length=2045
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39380.1 | Symbols: ATEXO70H2, EXO70H2 | exocyst subunit exo... 3125 0.0
> AT2G39380.1 | Symbols: ATEXO70H2, EXO70H2 | exocyst subunit exo70
family protein H2 | chr2:16447006-16449083 REVERSE LENGTH=2078
Length=2078
Score = 3125 bits (1692), Expect = 0.0
Identities = 1935/2051 (94%), Gaps = 22/2051 (1%)
Strand=Plus/Plus
Query 1 AACATAATCAGGAAGAAGagtagtagtagtagtagtaAAACCTCATCAATGGCGaaaaaa 60
|||||| |||| ||| | || ||||||| |||||||||| || ||||||| ||||||||
Sbjct 32 AACATATTCAGAAAG-A-AG-AGTAGTA--AGTAGTAAAATCTTATCAATGTCGAAAAAA 86
Query 61 aCAAAGTCTGTTCATTTCTCTACCTCTTCTCCTAAATCACTCCTTTCTTCTTTTTCTTCA 120
| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 87 CCGAAGTCTGTTCATTTCTCTACCTCTTCTCCTAAATCATTCCTTTCTTCTTTTCCTTCA 146
Query 121 TTAACTTCCCTCCCGGCTTCTCCTCTTAATCAGACTTTTTCTCAGTCGATGATGGAGGAA 180
|| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 147 TTCACTTCTCTCCCGGCTTCTCCTCTCAACCAGACTTTTTCTCAGTCGATGATGGAGGAA 206
Query 181 AACGTTGAGGCCGCGGAATTGATCATCAAGAAATGGGATCTGAACTCACCGTCCTACACA 240
| |||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 207 ACCGTTGAGGCCGCAGAATCAATCATCAAGAAATGGGATCCGAACTCACCATCCTACACA 266
Query 241 AGGATCATCTCTCTGTTTAGTCATAGCAGAAAAGAGGCCAAAGAATTCATCAGATGCATC 300
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 267 AAGATCATCTCTCTGTTTAGTCATAGCAGAAGAGAGGCCAAAGAATTCATCAGATGCATC 326
Query 301 CGTGACTTACGCAGAGCCATGCACTTTCTTATCTCTCAGCACTCTCAATCTGCCAAGCTA 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 327 CGTGACTTACGCAGAGCCATGCACTTTCTTATCTCTCAGCACTCAAAATCTGCCAAGCTA 386
Query 361 GTTCTTGCACAGCATCTGATGCAGATCGGTATGGCCAGGCTCGAGAAAGAGTTCTTCCAG 420
|||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 387 GTTCTTGCACAGCACCTGATGCAGATTGCTATGGCCAGGCTCGAAAAAGAGTTCTTCCAG 446
Query 421 ATTCTGTCTTCAAACCGAGACCAACTTGATCCTGAATCTGTCTCTGGTCACTCCTCAATT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 447 ATTCTGTCTTCAAACCGAGACCAACTTGATCCTGAATCTGTCTCTGGTCACTCCTCCATT 506
Query 481 TCAAGCAATTCAGAATTTGAAGATGTTATGCAA---TCTGATGATGATGAAGAAGATGAG 537
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 507 TCAAGCAATTCAGAATTTGAAGATGTTATGCAATCTTCTGATGATGAAGAAGAAGATGAG 566
Query 538 CTGAAGAAGGCTGGTGAAACGATCACCAAGGTCGAAAAAGCTGCAGCACTTGTGATGTCA 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 567 CTGAAGAAGGCTGGTGAAACGATCACTAAGGTCGAAAAAGCTGCAGCACTTGTGATGTCA 626
Query 598 GACCTCAAGGTCATAGCAGAGAGTATGATCAGTTGTGGATATGGTAAAGAGTGCATAAAG 657
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 627 GACCTCAAGGTCATAGCAGAGACTATGATCAGCTGTGGATATGGTAAAGAGTGCATAAAG 686
Query 658 AGCTATAAGTTGATCAGAAAGTCAATTGTAGATGAAGGGCTACACTTACTTGGGATCGAA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 687 AGCTATAAGTTGATCAGAAAGTCAATTGTAGATGAAGGGCTACACTTACTTGGTATCGAA 746
Query 718 AAGTGCAAGATCTCCCGGTTCAACAGAATGGACTGGGGCGTGCTCGAGCATATGATCAAG 777
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 747 AAGTGCAAGATCTCCCGGTTCAACAGAATGGACTGGGACGTGCTCGAGCATATGATCAAG 806
Query 778 AACTGGATCAAAGCTGCAAAGATTGGAGTCATAACACTCCTCCGCGGAGAAAAACTTCTC 837
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 807 AACTGGATCAAAGCTGCAAAGATTGGTGTCATAACACTCCTCCGCGGAGAGAAACTTCTA 866
Query 838 TGTGATCATGTCTTCTCTGCTTCAAGTACCATAAGAGAGTCTTGCTTTTACGAGATAGTG 897
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 867 TGTGATCATGTCTTCTCTGCTTCAAGTACAATAAGAGAGTCTTGCTTTTACGAGATAGTG 926
Query 898 AACGAAGCAGGAATCAATCTTTTCAGGTTCCCAGAACTCGTTGCCAATAAGGAGAAAAAA 957
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 927 AACGAAGCAGGAATCAATCTTTTCAAGTTCCCAGAACTCGTTG-C-----GGAGAAAAAA 980
Query 958 TCATCGCCCGAGAGGATCTTCAGGCTGATGGATCTCTATGCAGCAATCTCTGACCTTAGG 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CCATCGCCAGAGAGGATCTTCAGGCTGATGGATCTCTATGCAGCAATCTCTGACCTTAGA 1040
Query 1018 CCAGACATAGAGCTGATATTCCACTTTGATTCAGTAGCTGCTGTAAAAACTATAGTCATC 1077
||||||||||| ||||||||||||||||| |||||||||||||| |||||| | ||| ||
Sbjct 1041 CCAGACATAGAACTGATATTCCACTTTGACTCAGTAGCTGCTGTTAAAACTCTGGTCCTC 1100
Query 1078 TCATCGCTGAAGAAACTCAAGCAGGCAATCCACACAAGTCTCACGGAATATGAGTCGACA 1137
||||||||||||||||||||| | ||||| |||||||||||| ||||| |||||| |||
Sbjct 1101 TCATCGCTGAAGAAACTCAAGGACTCAATCTACACAAGTCTCATGGAATTTGAGTCAACA 1160
Query 1138 ATACAAAAGGATTCTTCGAAAGCACTAACTGCAGGAGGAGGGATTCACAAGCTGACTCGA 1197
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1161 ATACAAAAGGATTCTTCTAAAGCACTAACTGCAGGAGGAGGGATTCACAAGCTGACTAGA 1220
Query 1198 TCAACCATGAGTTTCATATCATCTCTTTCTGAATACAGCCGTGTGTTATCCGAGATCCTT 1257
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1221 TCAACCATGAGTTTCATATCATCTCTTTCTGAATACAGCCGTGTGTTATCAGAGATTCTT 1280
Query 1258 GCAGAACATCCTCTTAAGAAAAACGCCCGTATGCTAGAATCTTATTTCACAGCTCCAATC 1317
||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1281 GCAGAGCATCCACTTAAGAAAAACACACGTATGCTAGAATCTTATTTCACAGCTCCAATC 1340
Query 1318 TTAGAAGATGAACACAACAACCACGCAGTCTCGGTCCATCTAGCTTGGCTCATCTTGGTT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1341 TTAGAAGATGAACACAACAACCACGCAGTCTCGGTCCATCTAGCTTGGCTCATCTTGATT 1400
Query 1378 TTCCTATGCAAACTAGACATCAAAGCAGAGAGCTACAAGGATGTTTCTCTCTCTTACCTC 1437
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1401 TTCCTATGCAAACTAGACATCAAAGCAGAGAGTTACAAGGATGTTTCCCTCTCTTACCTC 1460
Query 1438 TTCCTAGTGAACAACATTCAGTTTGTGGTTGATACCGTTCGTTCAACTCACCTCAGGAAC 1497
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1461 TTCCTAGTGAACAACATTCAGTTTGTGGTTGATACCGTTCGTTCAACACACCTCAGGAAC 1520
Query 1498 CTCCTGGGAGACGACTGGCTCACAAAGCACGAAACAAAACTCAGAAGCTACGCTGCAAAC 1557
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1521 CTCCTCGGAGACGACTGGCTCACAAAGCACGAAGCAAAACTCAGAAGCTACGCTGCAAAC 1580
Query 1558 TACGAGATCGCAGCGTGGGCCAATGTATACATATCTTTACCAGAGAAAACAAGTAGCACA 1617
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1581 TATGAGATCGCAGCGTGGGCCAATGTATACATATCTTTACCAGAGAAAACAAGTAGCAGA 1640
Query 1618 CTATCACCAGAGGAGGCCAAAGCACATTTCAAGAGATTTCACGCGGCATTCGAAGAAGCT 1677
|||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 1641 CTATCACCAGAGGAAGCCAAAACACATTTCAAGAGGTTTCACGCGGTATTCGAAGAAGCT 1700
Query 1678 TATATGAAACAATCATCATGTGTCATAACAGATGCAAAGCTTAGGAACGAGCTTAAGGTT 1737
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct 1701 TATATGAAACAATCATCATGTGTGATAACAGATGCAAAACTTAGGAACGAGCTAAAAGTT 1760
Query 1738 TCCATAGCAAAGAAAATTGTACCGGAATACAGAGAGTTTTATGGCAAGTACTTGCCAACG 1797
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 1761 TCCATAGCAAAGAAAATAGTACCGGAATACAGAGAGTTTTACGGTAAGTACTTGCCAACG 1820
Query 1798 CTGAGCAAGGAGAGAAACATAGAAATGCTGGTGAGGTTTAAGCCTGATAACTTGGAGAAC 1857
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1821 CTGAGTAAGGAGAGAAACATAGAGATGCTGGTGAGCTTTAAGCCTGATAACTTGGAGAAC 1880
Query 1858 TATCTCTCAGATCTGTTTCATGGAACACCAATACTTAGTGGttcttcttcttcttcttct 1917
|||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1881 TATCTCTCGGATTTGTTCCATGGAACACCAATACTTAGTGGCTCTTCTTCTTCTTCTTCC 1940
Query 1918 tctt---cttcttcATCTTGTATCTCACTTGGATGTGTAAGAAACTAAAGTTCAGAGTTA 1974
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1941 TCTTTGTCTTCTTCATCTTGTATCTCACTTGGATGTGTAAGAAACTAAAGTTCACAGTTA 2000
Query 1975 GAGCATTTGCTTAGTATCTTCATCACTTAAACTAAATGGATGTGATTATGTGAAATATTA 2034
|| |||||||||||||||||||||||||| | ||| | || |||||||||||||||||
Sbjct 2001 GAACATTTGCTTAGTATCTTCATCACTTACATTAA--G--TG-GATTATGTGAAATATTA 2055
Query 2035 AATATGTAAGC 2045
|||||||||||
Sbjct 2056 AATATGTAAGC 2066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101354900355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5