BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482958

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39390.1 | Symbols:  | Ribosomal L29 family protein  | chr2:...   852    0.0  


> AT2G39390.1 | Symbols:  | Ribosomal L29 family protein  | chr2:16450660-16451878 
REVERSE LENGTH=631
Length=631

 Score =  852 bits (461),  Expect = 0.0
 Identities = 514/539 (95%), Gaps = 6/539 (1%)
 Strand=Plus/Plus

Query  59   AGAGAGAACTCGAAGACGCAATGGCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAA  118
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  97   AGAGAGAGCTCGAAGACGCAATGGCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAA  156

Query  119  AAGCTGATCTTTCGAGTCAGTTGAAGGAATTTAAGGCGGAGCTTGCTCTTCTTCGTGTCG  178
            |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct  157  AAGCTGATCTTTCGGGTCAGTTGAAGGAATTTAAGGCAGAGCTTGCTCTCCTTCGTGTCG  216

Query  179  CTAAGGTCACTGGAGGTGCTCCCAACAAGCTCTCTAAGATCAAGGTGGTGAGGAAGTCGA  238
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  217  CTAAGGTCACTGGAGGTGCTCCTAATAAGCTCTCTAAGATCAAGGTGGTGAGGAAGTCGA  276

Query  239  TTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCTTTGAGAGAGGCATACA  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  277  TTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCTTTGAGAGAGGCATACA  336

Query  299  AGAACAAGAAGCTTTTACCTCTCGATCTTCGTCCCAAGAAGACTAGAGCTATCAGGAGGA  358
            |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  337  AGAACAAGAAGCTTTTGCCTCTTGATCTTCGTCCCAAGAAGACTAGAGCCATCAGGAGGA  396

Query  359  GACTCACCAAGCATCAGGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAAATGTACT  418
            ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  397  GACTCACTAAGCATCAGGCATCGTTGAAGACAGAGAGGGAGAAGAAGAAAGAAATGTACT  456

Query  419  TTCCGATAAGAAAGTATGCTATTAAGGTGTAAGCTTTTATCTTAATCACATCAAtttttg  478
            |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  457  TTCCAATAAGGAAGTATGCTATTAAGGTGTAAGCTTTTATCTTGATCACATCAATTTTTG  516

Query  479  tgttttgaatttgagctcttgtgtgagtttttgctt-gttttctttccttgttAAAGATA  537
            ||||| ||||||||||||  |||||||||||||||| |||||| ||||||||||||||||
Sbjct  517  TGTTT-GAATTTGAGCTC--GTGTGAGTTTTTGCTTTGTTTTCCTTCCTTGTTAAAGATA  573

Query  538  TTGAAATCTCATCTTAATGAAAGATTGAATCAGAAAATA-AGTATTGTTATATGATTGG  595
            || ||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||||
Sbjct  574  TTAAAAGCTCATCTTAATGAAAGATTGATTCAGAAAA-ACAGTATTGTTATATTATTGG  631


 Score = 99.0 bits (53),  Expect = 5e-20
 Identities = 57/59 (97%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  1   TTAAGTCTTAGCCGTCATCTTCTTCATTTTTCTCTAGGGTTTCTAATCTCTTATAACAA  59
           |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  13  TTAACTCTTAGCCGTCTTCTTCTTCATTTTTCTCTAGGGTTTCTAATCTCTTATAACAA  71



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5