BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482961
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39420.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1696 0.0
AT2G39410.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 828 0.0
> AT2G39420.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:16460364-16463061 FORWARD LENGTH=1221
Length=1221
Score = 1696 bits (918), Expect = 0.0
Identities = 1083/1160 (93%), Gaps = 22/1160 (2%)
Strand=Plus/Plus
Query 19 AGAGAGATTCAGAC-GAAATCTCTTC-GTAAGAATGGCAAGTGAAACAGAGAACATCAAG 76
|||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 47 AGAGAGATTCAGACTCAAATCTC-TCAGTAGGAATGGCAAGTGAAACAGAGAACATCAAG 105
Query 77 TATGAAGAGAGTTTCATCAAGAACACTCGAGGAATGAAACTGTTCACGTGTAAATGGGTA 136
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 106 TATGAAGAGAGTTTCATCAAGAACACTCGAGGAATGAAACTGTTCACGTGCAAATGGGTA 165
Query 137 CCAGCAAATCAAGAGCCAAAGGCTTTAGTCTTCATTTGCCATGGTTATGCAATGGAATGT 196
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 166 CCAGCAAAGCAAGAGCCAAAGGCTTTAGTCTTTATTTGCCATGGATATGCAATGGAATGT 225
Query 197 AGCATCACCATGAACAGTACTGCAAGGAGGCTTGTGAAAGCAGGATTTGCGGTATATGGA 256
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 226 AGCATCACCATGAACAGTACTGCGAGGAGGCTGGTGAAAGCAGGATTTGCGGTATATGGA 285
Query 257 ATTGATTACGAAGGACATGGAAAATCTGATGGGCTTAGTGCTTATGTCCCAAACTTTGAC 316
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ATTGATTACGAAGGGCATGGAAAATCTGATGGGCTTAGTGCTTATGTCCCAAACTTTGAC 345
Query 317 CATCTCGTTGATGATGTCTCTACTCACTACACAAGCATTTGCGAGAAAGAAGAGAATAAA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CATCTCGTTGATGATGTCTCTACTCACTACACAAGCATTTGCGAGAAAGAAGAGAATAAA 405
Query 377 GGGAAGATGAGGTTCTTGTTAGGAGAATCAATGGGAGGAGCAGTGCTTTTGTTGTTACAC 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GGGAAGATGAGGTTCTTGTTAGGAGAATCAATGGGAGGAGCAGTGCTTTTGTTGTTACAC 465
Query 437 AGAAAGAAGCCTCAGTTTTGGGATGGGGCTGTCTTGGTTGCTCCAATGTGTAAGATTGCT 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AGAAAGAAGCCTCAGTTTTGGGATGGGGCTGTCTTGGTTGCTCCAATGTGTAAGATTGCT 525
Query 497 GAAGAAATGAAACCAAGCCCTTTGGTAATTTCGATATTGTCCAAACTTAGCGGAGTGATA 556
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 526 GAAGAAATGAAACCAAGCCCTTTGGTAATTTCGATATTGGCCAAACTTAGTGGAGTGATA 585
Query 557 CCTACGTGGAGAATCATCCCTGGCCAAGATATCATTGAGACTGCTTTTAAGCAGCCAGAA 616
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CCTTCGTGGAAAATCATCCCTGGCCAAGATATCATTGAGACTGCTTTTAAGCAGCCAGAA 645
Query 617 ATCAGGAAACAGGTTAGGGAAAATCCTTACTGCTACAAGGGACGTCCACGTTTGAAGACT 676
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 646 ATCAGGAAACAGGTTAGGGAAAATCCCTACTGCTACAAGGGACGTCCACGTTTGAAGACT 705
Query 677 GCCTATGAGCTATTGAGGGTTAGCACCGATCTCGAGAAGAGACTTAATGAGGTTTCATTA 736
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 706 GCTTATGAGCTTTTGAGGGTTAGCACCGATCTCGAGAAGAGGCTTAATGAGGTTTCATTA 765
Query 737 CCGTTCAT-GCTTTTGCACGGAGAAGACGATAAAGTCACCGACAAAGCAGTGAGCCGACA 795
|||||||| | |||||||||| ||||||||||||||||| || ||||| ||||| |||||
Sbjct 766 CCGTTCATAG-TTTTGCACGGTGAAGACGATAAAGTCACAGATAAAGCGGTGAGTCGACA 824
Query 796 GCTCTATGAGGTTGCGA-CGAGTGCAGACAAGACTTTCAAGTTGTACCCTGGGATGTGGC 854
|| ||||| ||||| | | ||| | ||||||||||||||||||||||||||||||||||
Sbjct 825 ACTGTATGAAGTTGC-ATCTAGTTCGGACAAGACTTTCAAGTTGTACCCTGGGATGTGGC 883
Query 855 ATGGTTTACTCTACGGCGAGACACCAGAGAACATCGAGATTGTTTTTGCTGACATTATTG 914
||||||||||||| || |||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 884 ATGGTTTACTCTATGGAGAGACACCAGAGAATATCGAGACTGTTTTTGCTGACATCATTG 943
Query 915 GTTGGTTGGACAAGAAAGTTTCTGATGGACA-TGGAGGCTTTGAATCCGAGCTTAAACGT 973
| |||||||| ||||||||| |||||| | | ||||||||||||||||||||||||||||
Sbjct 944 GCTGGTTGGATAAGAAAGTTGCTGATGAA-AGTGGAGGCTTTGAATCCGAGCTTAAACGT 1002
Query 974 AAAAATGATGGCATCTC-TTTGAAAGGGTAGTTATCAATCTAA--TAAACAAATTAAGCA 1030
||||||||||| || || ||||||||||||||||||| | ||| ||||||||| ||| |
Sbjct 1003 AAAAATGATGGTAT-TCCTTTGAAAGGGTAGTTATCACTTTAACATAAACAAATAAAGGA 1061
Query 1031 TAGTTAAATTGtgtttgtttgtttgtttttctct-ttt-cctgaattctgtttatgttaa 1088
|||||||| | ||||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1062 TAGTTAAAATCTGTTTGTCTGTTTGTTTTTCTCTCTTTTCCTGAATTCTGTTTATGTTAA 1121
Query 1089 gtagtt-t-acaatgtttgtCACCCAT-TGACTTACCGTAA-ATCTATATAATAATTTAT 1144
||||| | || ||||||||||| | | ||||||| |||| | |||| |||||||||||
Sbjct 1122 TTAGTTGTTACCATGTTTGTCACTC-TCTGACTTAGTGTAATA-CTATTTAATAATTTAT 1179
Query 1145 GGAAAAGATTTGA-AAGAAA 1163
||| ||||| | ||||||
Sbjct 1180 GGATTTGATTTCACAAGAAA 1199
> AT2G39410.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:16455569-16458217 FORWARD LENGTH=1052
Length=1052
Score = 828 bits (448), Expect = 0.0
Identities = 794/957 (83%), Gaps = 39/957 (4%)
Strand=Plus/Plus
Query 35 AATCTCTTCGT-AAG-AATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCA 92
|||||||| || | | |||||| | |||||||||| |||||||||| |||||||||||||
Sbjct 83 AATCTCTT-GTGACGTAATGGCGATTGAAACAGAGGACATCAAGTACGAAGAGAGTTTCA 141
Query 93 TCAAGAACACTCGAGGAATGAAACTGTTCACGTGTAAATGGGTACCAGCAAATCA-AGAG 151
| ||||||||||||||| | || ||||||| || | |||| ||||| |||| || ||||
Sbjct 142 TAAAGAACACTCGAGGATTTAAGTTGTTCACATGCAGATGGCTACCAACAAA-CAGAGAG 200
Query 152 CCAAAGGCTTTAGTCTTCATTTGCCATGGTTAT-GCAATGGAATGTAGCATCACCATGAA 210
|||| ||||||||| ||| |||||||||| ||| || |||||||| || |||||||||||
Sbjct 201 CCAAGGGCTTTAGTTTTCCTTTGCCATGGATATGGC-ATGGAATGCAGTATCACCATGAA 259
Query 211 CAGTACTGCAAGGAGGCTTGTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGG 270
|||||||| || ||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 260 TAGTACTGCTAGAAGGCTTGTGAAGGCAGGATTTGCGGTATATGGAATGGATTATGAAGG 319
Query 271 ACATGGAAAATCTGATGGGCTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGA 330
|||||||||||||||||||||||| |||||| || |||||||||| | ||| ||||||||
Sbjct 320 ACATGGAAAATCTGATGGGCTTAGCGCTTATATCTCAAACTTTGATCGTCTTGTTGATGA 379
Query 331 TGTCTCTACTCACTACACAAGC-ATTTGCGAGAAAGAAGAGAATAAAG-GGAAGATGAGG 388
|||||| |||||||||||| || |||||||||| ||||| || || | |||||||||||
Sbjct 380 TGTCTCAACTCACTACACA-GCTATTTGCGAGAGGGAAGAAAACAA-GTGGAAGATGAGG 437
Query 389 TTCT-TGTTAGGAGAATCAATGGGAGGAGCAGT-GCTTTTGTTGTTACACAGAAAGAAGC 446
|| | |||||||||| ||||||||||||||||| | |||||||| || ||| ||||| |
Sbjct 438 TT-TATGTTAGGAGAGTCAATGGGAGGAGCAGTTG-TTTTGTTGCTAGGCAGGAAGAACC 495
Query 447 CTCAGTTTTGGGATGGGGCTGTCTTGGTTGCTCCAATGTGTAAGATTGCTGAAGAAATGA 506
|| | ||||||||||| ||| ||||||| ||||||||||||||||| || ||||||||||
Sbjct 496 CTGACTTTTGGGATGGAGCTATCTTGGTCGCTCCAATGTGTAAGATCGCAGAAGAAATGA 555
Query 507 AACCAAGCCCTTTGGTAATTTCGATATTGTCCAAA-CTTAG--CGGAGTGATACCTACGT 563
| ||||| ||||| || ||||||||||| | ||| |||| || | | ||||| | |
Sbjct 556 AGCCAAGTCCTTTTGTTATTTCGATATTAAC-AAAGCTTATTTCG-ATT-ATACCCAAAT 612
Query 564 GGAGAATCATCCCTGGCCAAGATATCATTGAGACTGCTTTTAA-GCAGCCAGAAATCAGG 622
||| |||||| ||| | ||||||||||| |||| | | | ||| | |||||||||| ||
Sbjct 613 GGAAAATCATTCCTAGTCAAGATATCATCGAGATTTCATATAAAG-AGCCAGAAATTAGA 671
Query 623 AAACAGGTTAGGGAAAATCCTT-ACTGCTAC-AAGGGACGTCCACGTTTGAAGACTGCCT 680
||||||||||| |||||||||| | |||| | || ||||| ||||| ||||| ||||| |
Sbjct 672 AAACAGGTTAGAGAAAATCCTTTA-TGCT-CGAAAGGACGACCACGCTTGAAAACTGCGT 729
Query 681 ATGAGCTATTGAGGGTTAGCACCGATCTCG-AGAAGAGACTT-AATGAGGTTTCATTACC 738
||||||| || ||| | |||| ||| || | ||||||||||| || ||||||||||| ||
Sbjct 730 ATGAGCTCTTAAGGATCAGCAACGA-CTTGGAGAAGAGACTTCAA-GAGGTTTCATTGCC 787
Query 739 GTTCATGCTTTTGCACGGAGAAGACGATAAAGTCACCGACAAAGCAGTGAGCCGACAGCT 798
||| || | || |||||||| || |||||||| || || ||||||||||||| | | ||
Sbjct 788 GTTTTTGGTATTACACGGAGATGATGATAAAGTAACAGATAAAGCAGTGAGCCAAGAACT 847
Query 799 CTATGAGGTTGCGACGAGTGCAGACAAGACTTTCAAGTTGTACCCTGGGATGTGGCATGG 858
|| |||||||| ||| || |||||||| || ||||||||||||||||||||||| ||
Sbjct 848 GTACAAGGTTGCGTTGAGCGCTGACAAGACCTTAAAGTTGTACCCTGGGATGTGGCACGG 907
Query 859 TTTACTCTAC-GGCGAGACACCAGAGAACATCGAGATTGTTTTTGCTGACATTATTGGTT 917
||| ||| || ||||||||||||||||||||||| ||||| ||||| ||| | || |||
Sbjct 908 TTTGCTC-ACCGGCGAGACACCAGAGAACATCGAAATTGTCTTTGCCGACGTCATCAGTT 966
Query 918 GGTTGGACAAGA-AAGTT-TCTGATGGACATGG-AGGCTTTGAATCCGAGCTTAAAC 971
||||||| || | |||| | | ||||| ||| ||| ||||| || ||||||||||
Sbjct 967 GGTTGGAAAAAAGAAGTGAT-T-ATGGAAATGATAGG-TTTGAGTCAGAGCTTAAAC 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57329022390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5