BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482962
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39430.1 | Symbols: | Disease resistance-responsive (dirige... 1823 0.0
> AT2G39430.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr2:16463347-16464531 FORWARD
LENGTH=1185
Length=1185
Score = 1823 bits (987), Expect = 0.0
Identities = 1102/1159 (95%), Gaps = 1/1159 (0%)
Strand=Plus/Plus
Query 1 AAACATCGAACACAAACCAAAGACAACTTGAGTAACCAAACGTAATACT-AAAATGGCCA 59
||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 23 AAACATCAAACACAAACCAAAGACAACTTGAGTAACCAAACCAAAGACTAAAAATGGCCA 82
Query 60 AAGCTCTTCACATTACCATCTTTCTTTTCCTCATATCCTCCAATCTCCTCGCATTTATCA 119
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 83 AAGCTCTTCACATAACCATCTTTCTCTTCCTCATATCCTCCAATCTCCTCGCATTTATCA 142
Query 120 ACTCCGCTAGACTTCTTGACGAGATCCAACCTCAGCCTCAGTTGGTCCCTACTGGCCAAA 179
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 143 ACTCCGCCAGACTTCTTGACGAGATCCAACCTCAGCCTCAGTTAGTCCCTACCGGCCAAA 202
Query 180 TCCCCATTGTGGCTCCAACCGAAGCCGAGGAGGATGATGGAACCGATGACAACACAGGAC 239
|||||| |||||||||||||||||| |||||||| |||||||||||||||||| ||||||
Sbjct 203 TCCCCACTGTGGCTCCAACCGAAGCTGAGGAGGAGGATGGAACCGATGACAACCCAGGAC 262
Query 240 CCGCAACCACAACCACAACTGCATCAGCAATTACAGTCCCAGCCGGTCCAGCAGGGGCTA 299
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 263 TAGCAACCACAACCACAACTGCATCAGCAGTTACAGTCCCAGCCGGTCCAGCAGAGGCTA 322
Query 300 CAGAGCCTTTACTAGAGTTCTTTATGCACGACGTGCTAGGCGGGTCTCACCCATCGGCTC 359
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 323 CAGAGCCATTACTAGAGTTCTTTATGCATGACGTGCTAGGCGGATCTCACCCATCAGCTC 382
Query 360 GTGTGGTTACCGGTATAGTAGCTCAAACCGAGGTGAACGGAATACCATTCTCAAAGGCCA 419
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 383 GTGTGGTTACAGGTATAGTAGCTCAAACTGAAGTGAACGGAATACCATTCTCAAAGGCCA 442
Query 420 GCAACAGCATTTTCCCGGTTGACAATGGAGTCCCACTGGTTAACTCAAACAACATCAACA 479
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 443 GTAACAGCATTTTCCCGGTTGACAATGGAGTCCCACTGGTCAACTCAAACAACATCAACA 502
Query 480 GTGTCATTAACCCAAACACAGCTCCACTTCTCACCGGACTTGGCGGTGCTCAAACCTCCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GTGTCATTAACCCAAACACAGCTCCACTTCTCACCGGACTTGGCGGTGCTCAAACCTCCA 562
Query 540 CCGTAATCCAAAACACTAACGGCAATTCCAACGATGCCCTTAGCGCCAACAATCTCCCTT 599
|||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 563 CCGTCATCCAAAACACTAACGGAAATTCCAACGATGCCCTTAGCGCCAACAGTCTCCCTT 622
Query 600 TTGTAACCGCCGGAAACCTCCCTCCCGGTGCTGCCCTCCAGCATCTCATGTTCGGAACCA 659
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TTGTAACTGCCGGGAACCTTCCTCCCGGTGCTGCCCTCCAGCATCTCATGTTCGGAACCA 682
Query 660 TAACCGTTGTAGATGATGAGCTAACCGAAAGCCACGAGCTCGGCTCAGCCGTTATAGGGA 719
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 683 TAACCGTTGTAGATGATGAGCTAACCGAAAGCCACGAGCTTGGCTCAGCCGTTATAGGGA 742
Query 720 GAGCTCAAGGCTTTTACTTGGCCAGTTCCTTGGACGGAACAAGTCAAACTCTTTCTCTGA 779
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 743 GAGCTCAAGGCTTTTACTTGGCCAGTTCCCTGGACGGAACAAGTCAGACTCTTTCTCTGA 802
Query 780 CAGTATTGCTACACGGAGAGCATGACCATCAAGACACTTTAGACGATGCCATTAGTTTCT 839
| ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 803 CTGTATTGCTACATGGTGAGCATGACCAGCATGACACTTTAGACGATGCCATTAGTTTCT 862
Query 840 TTGGGGTTCACCGGACCGCCTCTCATGCCTCCCAGATTGCGGTTATAGGCGGGACCGGGA 899
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 863 TTGGGGTTCACAGAACCGCCTCTCATGCCTCCCAGATCGCGGTTATAGGCGGGACCGGGA 922
Query 900 AGTTTGAGCACGCCAAAGGGTATGCCATAGTTGAAACTCTGCATAACCAGGACAACCAGC 959
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 923 AGTTTGAACACGCCAAAGGGTATGCCATAGTGGAAACTCTGCATAACCAGGACAACCAGC 982
Query 960 ATATCACTGATGGTCAAGATACCATCCTCCATTTCAGTGTATACCTCACCTACAAAGCTT 1019
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 983 ATATCACTGATGGTCAAGACACCATCCTCCATTTCAGTGTATACCTTACCTACAAAGCTT 1042
Query 1020 GAGGAGAAAATGAGACTTAAAACAAGAAATGATTGCTTTTGTATATGTTCTTGCTCACTA 1079
|| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1043 GAAGAGAAAATGAGTGTTAAAACAAGAAATGATTGCTTTTTTATATGTTCTTGCTCACTA 1102
Query 1080 GCCTCCGCTTGGGCCCTTTTTCCTTTGTTGTGCAAATCTGATATCTAAAGAAATTTATTT 1139
|| |||||||||| |||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 1103 GCTTCCGCTTGGGGCCTTTTTCCTTTGTTGCGCAAATTTGATTTCTAAAGAAATTTATTT 1162
Query 1140 AAATGAGACTGTTTCAATC 1158
|||||||||||||||||||
Sbjct 1163 AAATGAGACTGTTTCAATC 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5