BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482972
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39490.1 | Symbols: | F-box family protein | chr2:16486902-... 2001 0.0
> AT2G39490.1 | Symbols: | F-box family protein | chr2:16486902-16488645
REVERSE LENGTH=1594
Length=1594
Score = 2001 bits (1083), Expect = 0.0
Identities = 1351/1475 (92%), Gaps = 39/1475 (3%)
Strand=Plus/Plus
Query 1 TATATATCAAGAAGTGTGTTTAACAACAAAAGTAACATGATCAACGCCGAGAATCCAGCT 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 29 TATATATCAAGAAGTGTGTTTAACAACAAAAGTAACATGATCGACGCCGAGAATCCAGTT 88
Query 61 TTATAAAAACCCAAATCCGTACGTACCATAAACGTACTTTTCTTTAAAACCTCTCCGTTG 120
|||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||| | |
Sbjct 89 TTATGAAAATCCAAATCCGTACGTACC-TAAACGTACATTTCTTTAAAACCTCTCCATAG 147
Query 121 CAAATTCAAAGC---ACCTCAAAGTGCAATAACCATGGAGGAACACAAACCAGACATCCT 177
|||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 148 CAAATTCAAAGCAATACCTCACAGTGAAATAACCATGGAGGAACACAAACCAGATATCCT 207
Query 178 CTCAAGCCTACCGCTAGAGCTTCTCCTCTACATCATCAGCTTCCTCCCTTTCGAATCCGC 237
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 208 CTCGTGCCTACCGCTAGAGCTTCTACTCTACATCATCAGCTTCCTCCCTTTCGAATCCGC 267
Query 238 AAGACTAATCCCTTTGGTCTCCACACGGTTTAGGTCCGTTTGGAACCAAGCCTTACTCGT 297
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 268 AAGACTAACCCCTTTGGTCTCCACACGGTTTAGGTCCGTTTGGAACCAAGCCATACTCGT 327
Query 298 CGCTCACAGCCACAACGGCTCCATCGAAGACATATCTCACGTC-GTCTCTCGCTTCATCA 356
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 328 CGCTCACAGCCACAACGGCTCCATCGAAGACATATCTCATG-CTGTCTCTCGCTTCATCA 386
Query 357 ACAACTTCGACGAGCATGATCCTACTAAAAACACTCGGAGGCTAGAGTTACACGTTGACA 416
|||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 387 ACAACTTCGATGAGCATGATCCTTCTAAAAACACTCGGAAGCTGGAGTTACACGTTGACA 446
Query 417 AGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACCTCATGCATATGAGCTTCTTCT 476
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 447 AGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGCATATGAGCTTCTTCT 506
Query 477 TCTCTGGTGGTTCTAACAAAGAAGAGAGCTTTTGCTGGCGTCTTGAGATCAATGATCAGA 536
|||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 507 TCTCCGGTGGTTCTAAGAAAGAAGAGAGCTTTTGCTGGCGTCTTGAGATCGACGATCAGA 566
Query 537 TCCCAAGACGTGAGTACTCATCAAGCGGTTTCTTGGTGAAGACGCTTTGTTTAGCCTCGG 596
|||||||||||| | | | |||||||||||||||||||||||||||||||||| ||| |
Sbjct 567 TCCCAAGACGTGTGGA--C-TCAAGCGGTTTCTTGGTGAAGACGCTTTGTTTAGACTCCG 623
Query 597 TGAATTCGTTAACCTACGAGGTCGTTTCCTCCATGGTATTGGAATTTTCTTTACTTGATA 656
| ||||| |||||| | ||||| |||||||| ||||| |||||||||||||||||||| |
Sbjct 624 TTAATTCCTTAACCCATGAGGTTGTTTCCTCAATGGTTTTGGAATTTTCTTTACTTGACA 683
Query 657 GCCTCAAGATTTGTGGTTGCAAGGGATTGACTTCTCTCACTATTGATTCACCAACTAAGC 716
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 684 GCCTCAAGATTTGTCGTTGTAAGAGATTGACTTCTCTCACTATTGATTCACCAACTAAGC 743
Query 717 TTCTTCACTTATCAATCTCGGGATGCCCGAAGCTGAGATATCTCGAGATCAGATCATTGA 776
|||||||||| || |||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 744 TTCTTCACTTGTCCATCTCGGGATGCCCGAAGCTGAGATACCTCGAGATCATATCATTTA 803
Query 777 AGCTTAAAACTTTTCAATACCAAGGATCTCTACCTTTGATCAAGATTCATGAACATTTCA 836
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTCATGAACATTTCA 863
Query 837 ACTTGACCAGGGCGATTTTTGACGTAAGACAAGGCCCATGTTATTACAACAATGCTTTAG 896
||||||||| |||| |||| || |||| |||||||||| | ||||||||||| || ||||
Sbjct 864 ACTTGACCAAGGCGGTTTTCGATGTAACACAAGGCCCAAGCTATTACAACAACGCGTTAG 923
Query 897 ACATGGGTCCTCTCTTGCTGATCATCAAGAATTCTCAATCTCTTACTCTTTGCAGATGGA 956
|||| |||||||||| ||||| |||||||||||||||||||||||| || ||||||||||
Sbjct 924 ACATCGGTCCTCTCTCGCTGACCATCAAGAATTCTCAATCTCTTACACTATGCAGATGGA 983
Query 957 TGTTCGAGGAAGTAATAAAACCGTCCATATCATCATCTTGGAGATCATTCCAATTCTACA 1016
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCATTCCAATTCTACA 1043
Query 1017 AGTTACAAGAATTGCAGTGGATCGATAACTCGATGAACCAAGAA-AACATTAATTCCATG 1075
||||||||||||||| |||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1044 AGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAACAA-ATTAATTCTTTG 1102
Query 1076 ATTTCTTTTCTCAAACTTTGCCCATCAATCGAGCGCCTCTTCATTTCTATCGATTCAAAT 1135
|| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||
Sbjct 1103 ATCTCTTTTCTCAAACTTTGTCCATCAATAGAGCGCCTCTTCATTACTATCGATTCAAAT 1162
Query 1136 ACTTATAGTTCAAACGAAGAAGTTAGTGTTGATGCTGTCCATGCATGCGAGCATGCAAGA 1195
|||||||||||||||||||||||||||||| |||||| ||||||| | || | | |
Sbjct 1163 ACTTATAGTTCAAACGAAGAAGTTAGTGTTAATGCTGACCATGCAAG--AG--T--A-G- 1214
Query 1196 GTACTAAGGGATCT-GAAACTGGTCAAATTGGAAGGATTCGAGAGTGAAGATA-ATAAAA 1253
||||||||||||| ||| |||||||||||||||||||| |||||||||| | |||| |
Sbjct 1215 -TACTAAGGGATCTAGAAG-TGGTCAAATTGGAAGGATTCAAGAGTGAAGA-AGATAAGA 1271
Query 1254 ATCAACTGATATTGGCTCTACAACAGATAGTCAGTAAT-GATCAGCTTCTGCTTGTACTG 1312
||||||||||||| ||||||||| |||||||||||| | ||||||| |||||||||||||
Sbjct 1272 ATCAACTGATATTTGCTCTACAAGAGATAGTCAGTA-TCGATCAGCCTCTGCTTGTACTG 1330
Query 1313 TCTTCGATTTCTTGAGATCGATACTCTGACTTGGAATGGAAACGACAAAAGATTTATGTC 1372
||||| ||||||||| | | || | ||||||||||||||||||||||| |||||||
Sbjct 1331 TCTTCAATTTCTTGA---C--T--TCGG-CTTGGAATGGAAACGACAAAAGAGTTATGTC 1382
Query 1373 TAAATATACACGCATGAACATGCTTTAATTAATCTGCTGTCATTTTAACGCGTGGAT-T- 1430
|||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1383 TAAAGATACACGTATGAACATGCTTTAATTAACCTGCTGTCATTTTAACGCGTGGATATA 1442
Query 1431 --CCTATTTCTTGCTGTACAAGAAACCCTCGTGTA 1463
|| |||||||||| ||||||||| |||||||||
Sbjct 1443 TTCC-ATTTCTTGCTATACAAGAAATCCTCGTGTA 1476
Score = 132 bits (71), Expect = 1e-29
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1463 ATTAAAGATTTTTCACCAGTATGTATTATTCTAATGTATTTACTATGATATATTAATTAA 1522
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||
Sbjct 1512 ATTAAAGATTTTTCACCAGTATGTATTATTGTAATGTACTTACTATGATAAATTACTTAA 1571
Query 1523 AACAACATCAAGTTGATTTTCGC 1545
|||||||||||||||||||||||
Sbjct 1572 AACAACATCAAGTTGATTTTCGC 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5