BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482973
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39510.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 2156 0.0
> AT2G39510.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr2:16491143-16493151 REVERSE LENGTH=1406
Length=1406
Score = 2156 bits (1167), Expect = 0.0
Identities = 1335/1415 (94%), Gaps = 15/1415 (1%)
Strand=Plus/Plus
Query 1 ATCAGCTCTTTCTTACATCATATTGCAATTTCACATCACTTTATACCAAATTCAAGTATA 60
|||||||||||||||||||||||| ||| || ||||||||||| |||||| |||| ||
Sbjct 1 ATCAGCTCTTTCTTACATCATATTCCAA--TC-TATCACTTTATAACAAATTAAAGTCTA 57
Query 61 CGTTGAGATATGGCTTTAAAAACATGGAAGCCATTCATAACTGTTGTTTCTCTACAATTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CGTTGAGATATGGCTTTAAAAACATGGAAGCCATTCATAACTGTTGTTTCTCTACAATTT 117
Query 121 GGATATGCTGGACTGTCGATCATAGCGAAATTTGCACTGAACCAAGGCATGAGCCCTCAC 180
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 118 GGATATGCTGGATTGTCGATCATAGCGAAATTCGCACTGAACCAAGGCATGAGTCCTCAC 177
Query 181 GTTCTAGCTG-CATATCGCCATATCGTCGCTACAATTTTCATTGCTCCATTTGCCTATTT 239
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTCTAGC-GTCGTATCGCCATATCGTCGCTACAATTTTCATTGCTCCATTTGCCTATTT 236
Query 240 CTTGGATAGAAAAATACGGCCGAAGATGACGCTACCCATCTTCTTCAAGATATTGCTGCT 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 237 CTTGGATAGAAAAATACGGCCGAAGATGACGCTATCCATCTTCTTCAAGATATTGTTGCT 296
Query 300 TGGGTTATTGGAACCAACAATTGACCAGAACTTATACTACACTGGTATGAAGTACACTTC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 TGGGTTATTGGAACCAACAATTGATCAGAACTTATACTACACTGGTATGAAGTACACTTC 356
Query 360 CGCCACTTTCACAGCTGCAATGACCAATGTTCTTCCTGCCTTTGCCTTTATCATGGCATG 419
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 357 CGCCACTTTCACAGCTGCAATGACAAATGTTCTTCCTGCCTTTGCCTTTATTATGGCATG 416
Query 420 GATATTTAGACTTGAGAAGGTTAACGTCAAGAAAATACACAGCCAAGCCAAGATTCTAGG 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GATCTTTAGACTTGAGAAGGTTAACGTCAAGAAAATACACAGCCAAGCCAAGATTCTAGG 476
Query 480 GACAGTTGTGACAGTTGGTGGAGCAATGCTTATGACTCTTGTGAAAGGACCTTTAATTCC 539
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 AACAATTGTGACAGTTGGTGGAGCAATGCTTATGACTGTTGTGAAAGGACCTTTAATTCC 536
Query 540 TTTGCCTTGGGCTAATCCTCACGACATTCATCAAGACCCATCCAATACCGGAGTCCAACA 599
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 537 TTTGCCTTGGGCTAATCCTCACGACATTCATCAAGACTCATCCAATACCGGAGTCAAACA 596
Query 600 AGACCTAACTAAAGGCGCAAGCCTCATCGCTATCGGTTGTATCTGCTGGGCCGGTTTTAT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGACCTAACCAAAGGCGCAAGCCTCATCGCTATCGGTTGTATCTGCTGGGCCGGTTTTAT 656
Query 660 CAATCTCCAAGCAATCACGCTTAAGTCCTACCCGGTAGAGCTATCCTTGACAGCTTACAT 719
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 657 CAATCTCCAAGCGATCACGCTTAAGTCGTACCCTGTAGAGCTATCCTTGACAGCTTACAT 716
Query 720 ATGCTTCATGGGGTCTATTGAAAGCACTATTGTGGCACTTTTTATTGAAAGGGGAAATCC 779
||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 717 ATGTTTTTTGGGGTCTATTGAAAGCACTATTGTGGCACTTTTTATTGAAAGAGGAAATCC 776
Query 780 TTCTGCTTGGGCCATCCAATTGGATTCCAAATTACTAGCTGCTGTTTATGGTGGGGTGAT 839
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 777 ATCTGCGTGGGCCATCCACTTGGATTCCAAATTACTAGCTGCTGTTTATGGTGGAGTCAT 836
Query 840 ATGTTCAGGGATTGGTTATTACGTTCAAGGAGTAATTATGAAAACTCGAGGACCGGTGTT 899
|||||||||||||||||| |||||||||||||| || ||||||||||| ||||| |||||
Sbjct 837 ATGTTCAGGGATTGGTTACTACGTTCAAGGAGTGATAATGAAAACTCGTGGACCCGTGTT 896
Query 900 TGTGACTGCCTTCAATCCATTGAGCATGGTCATAGTTGCCATCTTGGGGTCTATAATTCT 959
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 897 TGTTACTGCCTTCAATCCATTGAGCATGGTCATTGTTGCGATCTTGGGGTCTATAATTCT 956
Query 960 TGCTGAGGTTATGTTCCTTGGGAGGATTCTTGGAGCGATAGTGATAGTTCTTGGACTCTA 1019
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 957 TGCTGAGGTTATGTTCCTTGGAAGGATTCTTGGAGCAATAGTGATAGTTCTTGGACTCTA 1016
Query 1020 TTCAGTTTTGTGGGGCAAAAGTAAAGACGAACCATCTTCATCATTTTCCGACACGGACAA 1079
||| ||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 1017 TTCGGTTTTGTGGGGAAAAAGCAAAGACGAACCATCTTCATCATTTTCAGACATGGACAA 1076
Query 1080 GGAACTCCCACTTAGTACTCCACAAATTGTGACACTCCCATCGAAAGCAAATGCAAAAAT 1139
||| || ||||||||||| |||||||||||| | ||||||| |||||||||||||||||
Sbjct 1077 GGAGCTACCACTTAGTACACCACAAATTGTG-C--TCCCATCAAAAGCAAATGCAAAAAT 1133
Query 1140 GGATACACATGATGCAAGTGTTGTGATCTCGAGGCCTAACACCAATGAATCAGTCtaaat 1199
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GGACACAAATGATGCAAGTGTTGTGATCTCGAGGCCTAACACCAATGAATCAGTCTAAAA 1193
Query 1200 taaacaaaaaactaacggcgataataaaaatataataagagaaaacAATGAGT--CCGGT 1257
|||| |||| |||||||||||| || ||||||||||||||||||||||||||| ||| |
Sbjct 1194 TAAAGAAAAGACTAACGGCGATTATTAAAATATAATAAGAGAAAACAATGAGTGTCCGAT 1253
Query 1258 TTCTAAACACCG---CGGATCGTTGCTTATTGGTAGAGTGTTATTGTAATGCTAATTTTG 1314
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TTCTAAACACCGGATCG-ATCGTTGCTTATTGGTAGAGTGTTATTGTAATGCTAATTTTG 1312
Query 1315 GCTTTGTTAAATTTTGTATCCGGCTATAATATATGAAATGTTTTGCACTACTTAAAGTAC 1374
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1313 GCTTTGTTAAATTTTGTATCCGGCTACAATATATGAAATGTTTTGCACTACTAAAAGTAC 1372
Query 1375 CTTTTACTTAAAATTATCTGGTGTTTTGAGTTCTT 1409
|||| |||||||||||| | |||||||||||||||
Sbjct 1373 CTTT-ACTTAAAATTATATAGTGTTTTGAGTTCTT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69427353735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5