BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482976
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39540.1 | Symbols: | Gibberellin-regulated family protein ... 289 1e-77
AT1G10588.1 | Symbols: | Gibberellin-regulated family protein ... 244 2e-64
> AT2G39540.1 | Symbols: | Gibberellin-regulated family protein
| chr2:16500866-16501241 FORWARD LENGTH=264
Length=264
Score = 289 bits (156), Expect = 1e-77
Identities = 217/244 (89%), Gaps = 14/244 (6%)
Strand=Plus/Plus
Query 4 TCTCTTCTCCTCGCATCTACATTTTTTGTACTTTCTAGCGCTGATTGTGTTACATGCGGT 63
|||||||||||| ||||| |||||| ||||||||| || ||||||| | | ||||||||
Sbjct 34 TCTCTTCTCCTCACATCTTCATTTTCTGTACTTTCAAGTGCTGATT-CG-T-CATGCGGT 90
Query 64 GGAAAGTGCAATGTGAGATGCTCAAAGGCAGGACAACATGAAGAGTGCCTCAAGTACTAC 123
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 91 GGAAAGTGCAATGTGAGATGCTCAAAGGCAGGACAACATGAAGAATGCCTCAAGTACTGC 150
Query 124 AATATATGTTGCCATAAGTGTAATTGTACACGGCACTGTCCTTCGG-ACACTTTTGGAAA 182
|||||||||||||| |||||||||||| | | |||||||| | ||||||||| |
Sbjct 151 AATATATGTTGCCAGAAGTGTAATTGT----G----T-TCCTTCGGGA-ACTTTTGGACA 200
Query 183 CAAAGATGAATGCCCTTGCTACCGTGATATGAAAAACTCCAAAGGCGGATCAAAGTGTCC 242
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 201 CAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACTCCAAAGGTGGATCCAAGTGTCC 260
Query 243 TTGA 246
||||
Sbjct 261 TTGA 264
> AT1G10588.1 | Symbols: | Gibberellin-regulated family protein
| chr1:3501202-3501904 FORWARD LENGTH=596
Length=596
Score = 244 bits (132), Expect = 2e-64
Identities = 212/248 (85%), Gaps = 16/248 (6%)
Strand=Plus/Plus
Query 4 TCTCTTCTCCTCGCATCTACATTTTTTGTACTTTCTAGCGCTGATTGTGTTA-CATGCGG 62
|||||||||||| ||||| |||||| ||||||||| |||||||||| | | |||||||
Sbjct 111 TCTCTTCTCCTCACATCTTCATTTTATGTACTTTCAAGCGCTGATT-CATCAGCATGCGG 169
Query 63 TGGAAAGTGCAATGTGAGATGCTCAAAGGCAGGA-C--A-ACATGAAGAGTGCCTCAAGT 118
||||||||||| ||||||||||||||||||| || | | |||||| |||||||| ||
Sbjct 170 TGGAAAGTGCAGTGTGAGATGCTCAAAGGCA-GATCGAACACATGAGGAGTGCCTTGAGG 228
Query 119 ACTACAATATATGTTGCCATAAGTGTAATTGTACACGGCACTGTCCTTCGGACACTTTTG 178
||| | ||||||||||||| |||||||||||| | | |||||||| |||| ||
Sbjct 229 ACTGCGATATATGTTGCCAGAAGTGTAATTGT-----G---T-TCCTTCGGGGACTTATG 279
Query 179 GAAACAAAGATGAATGCCCTTGCTACCGTGATATGAAAAACTCCAAAGGCGGATCAAAGT 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 280 GAAACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACTCCAAAGGCGGATCCAAGT 339
Query 239 GTCCTTGA 246
||||||||
Sbjct 340 GTCCTTGA 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5