BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482977
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39560.1 | Symbols: | Putative membrane lipoprotein | chr2:... 1478 0.0
> AT2G39560.1 | Symbols: | Putative membrane lipoprotein | chr2:16504846-16506008
REVERSE LENGTH=1163
Length=1163
Score = 1478 bits (800), Expect = 0.0
Identities = 989/1075 (92%), Gaps = 34/1075 (3%)
Strand=Plus/Plus
Query 20 TTTGGTCGAATCTGATAAAAAGGTCTTCTC-TT-TGTCGG-TTAAACGATGTATAAGAGA 76
|||||||||||| ||||||||||||||||| || ||| || | ||||||| | ||||||
Sbjct 99 TTTGGTCGAATCGGATAAAAAGGTCTTCTCTTTGTGTTGGAGT-AACGATGAACAAGAGA 157
Query 77 AGTGAATCTTATCTGGAAGAAGAAGAACGATGAGATCTTTGAGCAGTGTGGGACTTGCTC 136
|||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 158 AGTGAATCTTATCT---AGAAGAAGAAAGATGAGATCTCTGAGCAGTGTGGGACTTGCTC 214
Query 137 TAAGCATAGTCTTTGGTTGTTTGCTATTAGCTCTTCTCGCTGAACTCTATTACTTGCTTT 196
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 215 TAAGCATAGTCTTTGGTTGCTTGCTATTAGCTCTTCTCGCTGAGCTTTATTACTTGCTTT 274
Query 197 GGTGTAAGAAGAGGTCGACGACGAGAAGACCTGATTTTCGTAATGACTATTCTACCCCTG 256
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 275 GGTGTAAGAAGAGGTCGACGACGAGAAGACCTGATTTTCGAAATGACTATTCTACCCCTG 334
Query 257 GAACCAGAGAGCTTATCTTTATCTTCTGCTGCAGTAGTAGCACAAACCcttcttcttct- 315
|||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 335 GAACCAGAGAGCTTCTCTTCATCTTCTGTTGCAGTAGTAGCACAAACCCTTCTTCTTCTT 394
Query 316 c-c-ttcttcttcctctttctCAGACCCTAAACCCATTGAAACTCAACAACAATGTCTTC 373
| | ||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||
Sbjct 395 CTCCTTCTTCTTCCTCTTTCTCAAACCCTAAACCCATTGACACTCAACAACAGTGTCCTC 454
Query 374 CTAATAATGGTTTTGAGAATGTGGGTGGTCCAGGGCTTGTGCCGAGGTTTCTGTTCACAA 433
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 455 TTAATAATGGGTTTGAGAATGTTGGTGGTCCAGGGCTTGTGCCGAGGTTTCTGTTCACAA 514
Query 434 TCATGGAGGAAACAGTGGAAGAAATGGAATCTGAAGATGTGGTTTCCACAAAAGGAAAGA 493
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TCATGGAAGAAACAGTGGAAGAAATGGAATCTGAAGATGTGGTTTCCACAAAAGGAAAGA 574
Query 494 CTTTGAATGATTTGTTTCTTAACATGGAAAGTGGTGCCATAACTCCTCCATATCTCACTC 553
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 575 GTTTGAATGATTTGTTTCTTAATATGGAAAGTGGTGTCATAACTCCTCCATATCTCACTC 634
Query 554 CTCGTGCTTCTCCTTCGTTGTTCACGCCTCCTTTAACTCCATTACTAATGGAGTCTTGTA 613
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 635 CTCGTGCTTCTCCTTCGTTGTTCACGCCTCCTTTAACTCCATTGCTAATGGAGTCTTGTA 694
Query 614 ATGGTAGAAAAGAAGAGATGTCGAGTTTCTTCGAGTCATCTTCTGATGCTGAGTTTAATA 673
||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||
Sbjct 695 ATGGTAGAAAAGAAGAGATCTCGAGTTTGTTTGAGTCATCCTCTGATGCTGAGTTTAATA 754
Query 674 GACTAGTGAGATCATCTCCACTGTCATCATCACATTCACCATCATCTTCGCCATTGTCGA 733
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 755 GACTAGTGAGATCATCTCCATTGTCATCATCACATTCACCGTCATCTTCGCCATTGTCGA 814
Query 734 GATTCAAGTTCTTAAGAGACGCAGAAGAGAAGCTCTACAAGAAGAAAGTGATGGAGATTG 793
|||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct 815 GATTCAAGTTCTTAAGGGATGCAGAGGAGAAGCTTTACAAGAAGAAAGTGATGGAGATTG 874
Query 794 CAGAAGCTGAGTAAATTCAAGTGCTAAAA-TT-GGTAAAACACAGTTCAAGAATCGGATT 851
|||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 875 CAGAAGCTTAGTAAATTCAAGTGGTAAAAGTTTGGTAAAACACAGTTCAAGAATCGGATT 934
Query 852 TGTTCAAGTTCAA--T-CAAGAAGATGAGGTCTTGGAGA-AAA--CCAGGGATGATTAAT 905
|| | || | ||| | |||||||||||||||| ||||| ||| ||||| |||||||||
Sbjct 935 TGGT-AA-T-CAAGATTCAAGAAGATGAGGTCTAGGAGAGAAAAACCAGGAATGATTAAT 991
Query 906 AGAATTAAACCGGtttttttAGTCTGATTTAATCT-TCCTTAATCGTCAACAttttttt- 963
|||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||||
Sbjct 992 AGAATTAAACCGGTTTTT--AGTCTGATTTAAT-TGTCCTTAATCATCAACATTTTTTTT 1048
Query 964 GGTCTGGCTCTTAATCGGATTAAACCGACTGTAAATTTTCGGTGGAT------T--GTTA 1015
||||| |||| | |||||||||||||| |||||||||||||||||| | ||||
Sbjct 1049 GGTCTAGCTCGTCATCGGATTAAACCGGTTGTAAATTTTCGGTGGATAGAGAATTTGTTA 1108
Query 1016 GCCAAATTTGTGAATTTTGAATCAAATCTTGCGAATAAAGATGGGCTTTGGATTC 1070
|||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 1109 GCCAAATTTGTGGATTTTGAGTCAAATCACGCGAATAAAGATAGGCTTTGGATTC 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5