BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482978
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39570.1 | Symbols: | ACT domain-containing protein | chr2:... 2176 0.0
> AT2G39570.1 | Symbols: | ACT domain-containing protein | chr2:16507896-16510198
FORWARD LENGTH=1760
Length=1760
Score = 2176 bits (1178), Expect = 0.0
Identities = 1280/1330 (96%), Gaps = 4/1330 (0%)
Strand=Plus/Plus
Query 1 tttttttCCTCTGTTCGGTCAGCCATTGAA-T-TT-TTGATTCATTGGCTCTAAAACAGA 57
|||||||||||||||||||| ||||||||| | || ||||||||||||||||||||| ||
Sbjct 7 TTTTTTTCCTCTGTTCGGTCGGCCATTGAATTGTTGTTGATTCATTGGCTCTAAAAC-GA 65
Query 58 AAATGGGAATTCTCAACGACGACGCCGTTTTAATCGAACCGGGAAAAATCTCCGGCGATC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 66 AAATGGGAATTCTCAACGACGACGCCGTTTTAATCGAACCGGGAAAAATCTCCGGAGATC 125
Query 118 CCACAATCGTTACCGTCAATTGTCCCGATGAATCCGGTCTCGGTTCAACTCTCTGTAGAA 177
|||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 126 CCACCGTCGTTACCGTCAATTGTCCTGATGAATCCGGTCTCGGTTCAACTCTGTGTAGAA 185
Query 178 TCATCCTCGAATTTGGTCTCTCCATTACCCGAGCAGATTTTTCAACAGATGGAAGATGGT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TCATCCTCGAATTTGGTCTCTCCATTACCCGAGCAGATTTTTCAACAGATGGAAGATGGT 245
Query 238 GTTATATAGTGTTTTGGGTTACTCCAGATATTAGCTCTCCTAAAATTGATTGGGACAGCT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GTTATATAGTGTTTTGGGTTACTCCAGATATTAGCTCTCCTAAAATTGATTGGGACAGCT 305
Query 298 TAAAGAATCGTCTTTTATCTGCTTGTCCTTCTTGCTTAGGCTCTTTCTACTTCTGTCTCC 357
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 306 TAAAGAATCGTCTTTTATCAGCTTGTCCTTCTTGCTTAGGCTCTTTCTACTTCTGCCTTC 365
Query 358 AATCCAATGTCTCTAAGCCTCCTTCCCTTTATCTTCTCAAGTTCTTCTGCCGTGACAGGA 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 366 AATCCAATGTCTCTAAGCCTCCTTCCCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGA 425
Query 418 AAGGATTGCTTCATGATGTTACTAAAGTCTTGACAGAGCTAGAGTTTACGATACAAAGAG 477
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 426 AAGGATTGCTTCATGATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAG 485
Query 478 TCAAAGTCATGACAACACCAGATGGAAGAGTTTTGGACATGTTTTTCATCACTGACGCAA 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 TCAAAGTCATGACAACACCAGATGGAAGAGTTTTGGATATGTTTTTCATCACTGACGCAA 545
Query 538 TGGATCTATTGCACACGAAACAGAGGCAAACCAAAACGTGTGACCATCTAACGGCTGTGC 597
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 546 TGGATCTATTGCACACGAAACAGAGACAAACCAAAACGTGTGACCATCTAACGGCTGTGC 605
Query 598 TTGGTGAGCATGGTGTGAGCTGTGAGCTTGAACTAGCTGGGCCTGAGTTAGAGAGTGTGC 657
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TTGGTGAGCATGGTGTGAGTTGTGAGCTTGAACTAGCTGGGCCTGAGTTAGAGAGTGTGC 665
Query 658 AACGGTTCTCTTCACTTCCACCTCTGGCTGCTGATGAGCTGTTTGGCCCAGATGGGTTTG 717
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 666 AACGATTCTCTTCACTTCCACCTTTGGCTGCTGATGAGCTGTTTGGCCCAGATGGGTTTG 725
Query 718 ATAATAGCGGCTCTAGCTCTAACAAAGCGGTTCTCACGGTTGATAATCAGTTGAGCCCTG 777
||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 726 ATATTAGCGGCTCTAGCTCTAACAAAGCGGTTCTTACCGTTGATAATCAGTTGAGCCCTG 785
Query 778 CGCATACGGTGCTTCAGATTCGTTGTGTTGATCAAAAGGGGCTTTTCTATGATATCCTCA 837
| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 786 CACATACGTTGCTTCAGATTCGTTGTGTTGATCAAAAGGGACTTTTCTATGATATCCTCA 845
Query 838 GGACTTCCAAAGATTGCGATGTCCACATTGCCTACGGCAGGTTCTCCTCCAAGGTTAAAG 897
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 846 GGACTTCCAAAGACTGCGATGTCCACATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAG 905
Query 898 GCTATCGGAATTTGGAGTTGTTTGTTCGAGGTACAGACGGTAAGAAAATAGTGGACCCAA 957
| ||| |||||||||||||||||||| |||| |||||||| || |||||| |||||||||
Sbjct 906 GTTATAGGAATTTGGAGTTGTTTGTTAGAGGCACAGACGGGAATAAAATAATGGACCCAA 965
Query 958 AACATCAAGCCAACTTCTGTGCTCGACTTAAGGAGGAAATGGTGTGTCCTTTGCGAGTGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AACATCAAGCCAACTTCTGTGCTCGACTTAAGGAGGAAATGGTGTGTCCTTTGCGAGTGA 1025
Query 1018 TTATTGTAAACCGAGGACCAGATACTGAGCTATTAGTAGCCAACCCTGTGGAGCTATCTG 1077
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1026 TTATCGTGAACCGAGGACCAGATACTGAGCTATTAGTAGCCAACCCTGTGGAACTATCCG 1085
Query 1078 GAAAAGGAAGACCACGAGTTTTCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GAAAAGGAAGACCACGAGTTTTCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCT 1145
Query 1138 GCATATTCTCCGCTGAGATTGGGAGGCATTCGACTTTAGATCGACAATGGGAAGTTTATA 1197
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1146 GCATCTTCTCCGCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAGTTTATA 1205
Query 1198 GATTTCTTTTGGATGAGAGTCGTGAATTCCCGTTGGCTAGTCTCCGTGCGAGAAATCAAG 1257
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1206 GATTTCTTTTGGATGAGAGTCGTGAATTCCCATTGGCTAGCCTCCGTGCGAGAAATCAAG 1265
Query 1258 TAGTAGATAGAGTCACAAAGACACTTATGGGTTGGTGAAGTGAATGATAGTGAGCTTTCA 1317
|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 1266 TAGTAGATAGAGTCACAAAGACACTTATGGGTTGGTGAAGCGGATGAGAGTGAGCTTTCA 1325
Query 1318 TGAACATTAT 1327
||||| ||||
Sbjct 1326 TGAACGTTAT 1335
Score = 239 bits (129), Expect = 7e-62
Identities = 209/242 (86%), Gaps = 27/242 (11%)
Strand=Plus/Plus
Query 1327 TTCTTCGCTTGCAGCTTCGGGTCGATG--AAGAGTGA-GCAA-GGGGTTGTGATTGCTGT 1382
|||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||||
Sbjct 1367 TTCTTCGCTTGCGGCTTCGGGTCGATGAAAAGAGTGATGCAAGGGGGTTGTGATTGCTGT 1426
Query 1383 TGTATGGAGCTAATAGCGTTGTAAAGATTTGGGAAATTGT---A--A--A-ATGA-CGCA 1433
||| |||||||||||||||||||||| ||| ||||||||| | | | || | ||||
Sbjct 1427 TGTGTGGAGCTAATAGCGTTGTAAAGCTTT-GGAAATTGTAAAAGGATTATATAACCGCA 1485
Query 1434 ATTGCAATGAATGCTTGTAAAAACTCACTTTGCAAAGGTAAACCGAATCTTTCGGCCGTT 1493
|||||||||||||||||| ||||||||||||||||||| || | | ||| |||||
Sbjct 1486 ATTGCAATGAATGCTTGT--AAACTCACTTTGCAAAGGT-AA-C--A--TTT---CCGTT 1534
Query 1494 GATTAGGTGGTCACTACAAGAGAGCAACACGGAGTTGACCCGAGCCAGAATCGCAAACAT 1553
|| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1535 GACTAGGTGGTCACTACAAGAGAGCGACA-G-AGTTGACCCGAGCCAGAATCGCAAACAT 1592
Query 1554 GT 1555
||
Sbjct 1593 GT 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80069869275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5