BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482983
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39630.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 2028 0.0
> AT2G39630.1 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr2:16521744-16524687 REVERSE LENGTH=1401
Length=1401
Score = 2028 bits (1098), Expect = 0.0
Identities = 1266/1344 (94%), Gaps = 23/1344 (2%)
Strand=Plus/Plus
Query 1 TTCACGGATCAATCATTA-A----A-CTTTTCTTGCTTATTCTTCACGGA-----TT-G- 47
|||||||||||||||||| | | |||||||||||||||||||||||| || |
Sbjct 1 TTCACGGATCAATCATTAGACTTTAGCTTTTCTTGCTTATTCTTCACGGATTGGTTTCGA 60
Query 48 ----T-CTTCTTCACTCTCTCTCTTTCTTGTGAAACCAAAACAGATCTCAAATCTGGGGA 102
| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 61 TCTCTCCTTCTTCACTCTCTCTCTTTCTCGTGAAAGCAAAACAGATCTCAAATCTCGGGA 120
Query 103 GCAACAATGGAGTTTTTGGTAACAGTTGCGGAATTCGGCCTCTTGCTGCTGCTGATCGTC 162
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 121 GCAACAATGGAGTTTCTGGTAACAGTTGCGGAATTCAGCCTCTGGCTGCTGCTGATCGTC 180
Query 163 TTCTTCGGATTTCTCTCCGTCGTCGTTTTTGAAGCTTGGAGAAGGAGAAACAGTAACGTC 222
|| ||||||||||| ||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 181 TTATTCGGATTTCTATCCGTTGTTGTTTTTGAAGCTTGGAGAAGGAGACACAGTAACGTC 240
Query 223 TCTGTCGAGACGGTGACTACACTGGAGGATCCGAAATCTATAAAACCGATTCCTTGCCCT 282
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 TCTGTCGAGACCGTGACTACACTCGACGATCCGAAATCTATAAAACCGATTCCTTGCCCT 300
Query 283 CATATCACCGACCCTGCCGAGAAGTATTTGTCATTAATAGTTCCAGCGTATAATGAAGAA 342
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CATATTACCGACCCTGCCGAGAAGTATTTGTCTTTAATAGTTCCAGCGTATAATGAAGAA 360
Query 343 CTAAGACTTCCTGCAGCTCTTGAGGAAACAATGGATTACCTTCAAGATCGTGCATCACGG 402
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGAGACTTCCTGCTGCTCTTGAGGAAACAATGGATTACCTTCAAGATCGTGCATCACGG 420
Query 403 GACAAGAGTTTTTCTTTTGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACAAGAGTTTTTCTTTTGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAA 480
Query 463 AGAGTAGCTTTTGATTTTGTTAGAAAGCACACAGTTGACAACATAAGGGTTATACCCCTT 522
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 481 AGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTT 540
Query 523 GGGAAGAATCAAGGCAAAGGGGAAGCTATAAGAAAAGGAATGTTGCATTCGCGGGGTCAG 582
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGAAGAATCAAGGCAAAGGAGAAGCTATAAGAAAAGGAATGTTGCATTCGCGGGGTCAG 600
Query 583 CTACTTCTCATGTTGGATGCTGATGGAGCAACTAAAGTAACCGACCTAGAAAAACTTGAA 642
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 CTACTTCTCATGTTGGATGCTGATGGAGCAACTAAAGTAACGGACCTAGAAAAACTTGAA 660
Query 643 AATCAGATCAACGCAGTAGCCAGCGAAGAATATTCAATCAGAAATCCAGCATCTAAGGAT 702
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AATCAGATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAGGAT 720
Query 703 ATGGATTTTAGAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTCGTGCTCATCTCGAG 762
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGGATTTCAAAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTCGTGCTCATCTCGAG 780
Query 763 GAGAAAGCTCTTGCTACAAGGAAATGGTATCGCAACTTTCTGATGAAGGGCTTCCATCTT 822
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GAGAAAGCTCTTGCTACAAGGAAATGGTATCGCAACTTTCTGATGAAGGGTTTCCATCTT 840
Query 823 GTGGTTCTATTGGCTGCTGGTCCTGGTATTCGAGATACACAGTGTGGCTTCAAGATGTTT 882
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GTGGTTCTATTAGCTGCTGGTCCTGGTATTCGGGATACACAGTGTGGCTTCAAGATGTTT 900
Query 883 ACTAGAGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGGTGGTGCTTTGAT 942
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ACTAGGGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGGTGGTGCTTTGAT 960
Query 943 GTTGAATTGGTGTACTTGTGCAAACGTTTTAATATTCCAATGGTTGAGATCTCTGTGAAA 1002
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 961 GTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACCAATGGTTGAAATCTCTGTGAAA 1020
Query 1003 TGGTCTGAAATCCCCGGGTCAAAAGTCAGTATGTTGAGCATTCCAAACATGCTTTGGGAG 1062
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGTCCGAAATTCCCGGGTCTAAAGTCAGTATGTTGAGCATTCCAAACATGCTTTGGGAG 1080
Query 1063 CTTGCTTTAATGTCTGTGGGATACAGAACTGGCATGTGGAAGATCCATCAAGTATGAGAC 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTGCTTTAATGTCTGTGGGATACAGAACTGGCATGTGGAAGATCCATCAAGTATGAGAC 1140
Query 1123 ACATAGACAACACAACATACATAGAGCGTCTCCTCTTGGGaaaaa-aaCCCAGTCCACGC 1181
|||||||||||| | |||||||||||| | |||||||||||| || ||| | ||||||||
Sbjct 1141 ACATAGACAACA-A-CATACATAGAGCATTTCCTCTTGGGAATAACAACTC-GTCCACGC 1197
Query 1182 GGGTTTGCTGCAAAGAGGATATAGTTT-GATGTCTCTGAATCTCTGATCAAGCAAAAGGA 1240
||||| ||||| |||||||||||||| ||||||||||||| |||| |||||| |||||
Sbjct 1198 TGGTTTTCTGCAGAGAGGATATAGTTTTGATGTCTCTGAATTTCTGGTCAAGCTCAAGGA 1257
Query 1241 GAGCTAAGGCGATAGAAAACATGTTGGTCTTTCTTTCAATAGATGTAATAAAAATCTTAC 1300
|||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||||||
Sbjct 1258 AAGCTAAGGCGATAGAAAATATGTCGGTCTTTGTTTCAATAGATGTGATAAAAATCTTAC 1317
Query 1301 CGGATTAGAAATGATGAAATGAAA 1324
||||||| ||||||||||||||||
Sbjct 1318 CGGATTATAAATGATGAAATGAAA 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5