BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482986
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39660.1 | Symbols: BIK1 | botrytis-induced kinase1 | chr2:1... 2612 0.0
AT3G55450.2 | Symbols: PBL1 | PBS1-like 1 | chr3:20558102-20560... 741 0.0
AT3G01300.1 | Symbols: | Protein kinase superfamily protein | ... 76.8 6e-13
> AT2G39660.1 | Symbols: BIK1 | botrytis-induced kinase1 | chr2:16531688-16533931
FORWARD LENGTH=1773
Length=1773
Score = 2612 bits (1414), Expect = 0.0
Identities = 1669/1787 (93%), Gaps = 37/1787 (2%)
Strand=Plus/Plus
Query 1 CTTCTTCTTCTTCTGGTCACCCCTCGTGCCTCTCATTAACACCAAACCCAAAACActtcc 60
||||| |||||||| ||||||||||||||||||| |||||||||||||| ||| ||| ||
Sbjct 1 CTTCTCCTTCTTCTAGTCACCCCTCGTGCCTCTCTTTAACACCAAACCC-AAA-ACTCCC 58
Query 61 ttctctttcttctttccgctctgatctctgttcaca----tctctcatctttatctcctt 116
|||||||||||| |||| ||| |||||| ||||||| ||||||||||||| | |||
Sbjct 59 TTCTCTTTCTTCCTTCCTCTCCGATCTCCGTTCACATCTCTCTCTCATCTTTA--T-CTT 115
Query 117 tttttttttttGCCTTGTGGGTCCAAAGTTTCTATATTTCCTCTTTCTGTTCTGTTTACA 176
|| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||
Sbjct 116 CTTCTTTTTTTGCCTTGTGGGTTGAAAGTTTCTATATTTTCTCTTTCTCTTCTGTTTACA 175
Query 177 TAATCCATATTCAGCTCAAGCAGCTGAAGAAGAACGATCAAGAACC-AAATATAAGAAAA 235
|||||||| |||||||||||||||||||||| |||||||||||||| ||| | |||||||
Sbjct 176 TAATCCATTTTCAGCTCAAGCAGCTGAAGAATAACGATCAAGAACCAAAAAAGAAGAAAA 235
Query 236 CGAATCTGTTCTTAGC--TGATGGGTTCCTGCTTCAGTTCTCGAGTCAAAGCCGACATCT 293
|||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 236 CGAATCTGTTCTTAGCTTTGATGGGTTCTTGCTTCAGTTCTCGAGTCAAAGCAGACATCT 295
Query 294 TCCACAATGGTAAGAGCAGCGATCTTTACGGTCTAAGTCTCTCCAGTCGGAAATCGTCGT 353
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 296 TCCACAATGGTAAGAGCAGCGATCTTTATGGTCTAAGTCTCTCAAGTCGGAAATCGTCTT 355
Query 354 CAACTGTAGCGGCGGCTCAGAAGACGGAAGGGGAGATATTGAGTTCGACCCCCGTCAAAA 413
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 356 CGACTGTAGCGGCGGCTCAGAAGACGGAAGGGGAGATATTGAGTTCGACCCCTGTCAAAA 415
Query 414 GCTTCACCTTTAACGAACTCAAACTCGCCACCAGAAACTTCAGACCAGATAGTGTGATCG 473
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 416 GCTTCACCTTTAACGAACTCAAACTCGCCACAAGAAACTTCAGACCAGATAGTGTGATCG 475
Query 474 GAGAAGGTGGCTTTGGTTGTGTCTTTAAAGGCTGGTTAGATGAGACCACTCTCACTCCGA 533
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 476 GAGAAGGTGGCTTTGGTTGTGTCTTTAAAGGCTGGTTAGATGAGTCCACTCTCACTCCGA 535
Query 534 CTAAACCTGGAACCGGTTTGGTTATCGCCGTTAAAAAGCTTAACCAAGAAGGTTTTCAAG 593
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 536 CTAAACCTGGAACCGGTTTGGTCATCGCCGTTAAAAAGCTTAACCAAGAAGGTTTTCAAG 595
Query 594 GTCACCGTGAATGGCTGACAGAGATCAATTACTTGGGGCAATTGAGTCACCCAAATCTAG 653
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 596 GTCACCGTGAATGGCTGACAGAGATCAATTACTTGGGGCAACTGAGTCACCCAAATCTAG 655
Query 654 TCAAACTAATCGGGTATTGCTTAGAGGATGAACACCGTCTTCTTGTCTACGAGTTTATGC 713
| ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 656 TTAAACTGATCGGTTATTGCTTAGAAGATGAACACCGTCTTCTAGTCTACGAGTTTATGC 715
Query 714 AAAAAGGAAGTCTTGAGAATCATCTATTCAGAAGAGGTGCATATTTTAAGCCACTCCCAT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAAAAGGAAGTCTTGAGAATCATCTATTCAGAAGAGGTGCATATTTTAAGCCACTCCCAT 775
Query 774 GGTTTTTACGGATCCAGGTTGCGCTTGATGCAGCAAAGGGTCTTGCTTTTCTTCACAGCG 833
||||| ||||| || | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 776 GGTTTCTACGGGTCAATGTTGCGCTTGATGCAGCAAAGGGGCTTGCTTTTCTTCACAGCG 835
Query 834 ATCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGATTCGGACT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 836 ATCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGATGCGGACT 895
Query 894 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGGGACGGTCCAATGGGTGATTTGAGCT 953
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 896 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGAGACGGTCCAATGGGTGATTTGAGTT 955
Query 954 ATGTTAGTACAAGGGTCATGGGTACATATGGCTACGCCGCACCTGAGTACATGTCATCAG 1013
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 956 ATGTTAGTACAAGGGTCATGGGTACTTATGGGTACGCCGCGCCTGAGTACATGTCATCAG 1015
Query 1014 GTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTATTGCTTCTAGAGATTTTAT 1073
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1016 GTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTTTTGCTTCTAGAGATTTTAT 1075
Query 1074 CAGGTAAGCGAGCGTTGGATCATAACAGGCCGGCTAAAGAAGAAAACCTTGTGGATTGGG 1133
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 CTGGTAAGCGAGCGTTGGATCATAACAGACCGGCTAAAGAAGAAAACCTTGTGGATTGGG 1135
Query 1134 CTCGACCATACCTCACAAGCAAACGCAAGGTTCTCCTAATCGTGGACACTCGGCTAGACA 1193
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1136 CTCGACCGTACCTCACAAGCAAACGTAAGGTTCTCCTAATCGTGGACAATCGGCTAGACA 1195
Query 1194 CACAGTACTTACCTGAAGAAGCCGTGAGAGTGGCCAGCATTGCGGTGCAATGTCTCTCAT 1253
|||||||| |||||||||||||||||||| |||| ||| | |||||||| ||||||||||
Sbjct 1196 CACAGTACCTACCTGAAGAAGCCGTGAGAATGGCAAGCGTGGCGGTGCAGTGTCTCTCAT 1255
Query 1254 TCGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTTGCAACAACTTCAGG 1313
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 TTGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTTACAACAACTTCAGG 1315
Query 1314 ACAACTTGGGAAAACCGAGTCAGACCAATCCGGTTAAGGATACCAAGAAACTTGGTTTTA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ACAACTTGGGAAAACCGAGTCAGACCAATCCGGTTAAGGATACCAAGAAACTTGGTTTTA 1375
Query 1374 AAACTGGTACTA--A-GTCATCCGAAAAACGGTTTACACAAAAACCTTTTGGCAGGCACC 1430
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AAACTGGTACTACTAAGTCATCCGAAAAACGGTTTACACAAAAACCTTTTGGCAGGCACC 1435
Query 1431 TTGTGTAGGTCAAGCTGGTAATTGAGTTCCAGGATGGGCATTTTTTCGGCGAGT--ACTT 1488
|||||||||||||| || ||| ||| ||||||||||| ||||||| ||||| || ||||
Sbjct 1436 TTGTGTAGGTCAAGTTGATAACTGAATTCCAGGATGGACATTTTTCCGGCG-GTTTACTT 1494
Query 1489 GAAACTGCGGAGATCCGTTTTCCACGGATTG--T----T-CAGGACAAACCGTGCAGGTC 1541
|||||||| || |||||||||| |||||||| | | | ||||||||||||||||||
Sbjct 1495 GAAACTGCCGATATCCGTTTTCGACGGATTGAATGCGGTTCTGGACAAACCGTGCAGGTC 1554
Query 1542 GAGACTGATAATGGATACGTCAAATATTCCGGTTACATGTCCCATACCCACAACCTTAGA 1601
||||| |||| |||||| | |||| |||||||||||||||||||||||| | |||||||
Sbjct 1555 AAGACTAATAAAGGATACATTAAATTTTCCGGTTACATGTCCCATACCCA-A-CCTTAGA 1612
Query 1602 GAACATGTTTAGCCTTTAGGTTAGGCTTCCTTGTGTGCTGTTATATTGAGTGAAGTATAT 1661
|||||||| |||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 1613 GAACATGTGTAGCCTTTAGCTTAGGCTTCCTTGTGTGCTGTTATATTGAGT-A--TATAT 1669
Query 1662 AACTGAGGTATTTTTTACCTCTTCTGTTGTAACACTCTTGTATTTTTGTTCCTTTAACAT 1721
|||||| ||||| |||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1670 ----GAGGTAATTTTTGCCTCTTGTGTTGTAACACT-T-GTATTTTTGTTCCTTTAACAT 1723
Query 1722 TTGATGTAGAGATTTT-CCTATATCTTCAGTTTTGAAATCCAAATTT 1767
|||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1724 TTGATGTAGAGATTTTTCCTATATCTTCAGTTTTGAAACCCAAATTT 1770
> AT3G55450.2 | Symbols: PBL1 | PBS1-like 1 | chr3:20558102-20560096
FORWARD LENGTH=1441
Length=1441
Score = 741 bits (401), Expect = 0.0
Identities = 860/1077 (80%), Gaps = 49/1077 (5%)
Strand=Plus/Plus
Query 368 GCTCAGAAGACGGAAGGGGAGAT-ATTGAGTTCGACCCCCGTCAAAAGCTTCACCTTTAA 426
||||| ||||| ||||| || || || || || || ||||||||||||| | ||||||
Sbjct 235 GCTCATAAGACAGAAGGAGAAATCCTT-AGCTCAACGACCGTCAAAAGCTTTAGCTTTAA 293
Query 427 CGAACTCAAACTCGCCACCAGAAACTTCAGACCAGA-TAGTG-TGATCGGAGAAGGTGGC 484
||||| |||||||| || |||||||||||| | || | || || | ||||||||||||
Sbjct 294 TGAACTTAAACTCGCTACTAGAAACTTCAGATCGGACT-CTGTTG-TTGGAGAAGGTGGC 351
Query 485 TTTGGTTGTGTCTTTAAAGGCTGG-TTAGATGAGACCACTCTCACTCCGACTAAACCTGG 543
|||||||||||||||| ||| ||| || |||||||| ||||| ||||| || ||| || |
Sbjct 352 TTTGGTTGTGTCTTTAGAGGTTGGCTT-GATGAGACTACTCTTACTCCTACCAAATCTAG 410
Query 544 AACCGGT-TTGGTTATCGCCGTTAAAAAG-CTTAACCAAGAAGGTTTTCAAGGTCACCGT 601
| ||| || ||||| || ||| ||| | ||||||| || |||||||||||||||||
Sbjct 411 CTCTGGTCTT-GTTATTGCTGTT-AAACGACTTAACCCTGATGGTTTTCAAGGTCACCGA 468
Query 602 GAATGGCTGACAGAGATCAATTACTTGGGGCAATTGAGTCACCCAAATCTAGTCAAACTA 661
||||||||||||||||| || || |||||||| || |||||||| ||| | || ||| |
Sbjct 469 GAATGGCTGACAGAGATTAACTATTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATTG 528
Query 662 ATCGGGTATTGCTTAGAGGATGAACACCGTCTTCTTGTCTACGAGTTTATGCAAAAAGGA 721
|| || |||||||| || |||||||| || |||||||| || ||||||||||| || ||
Sbjct 529 ATTGGTTATTGCTTGGAAGATGAACAACGGCTTCTTGTGTATGAGTTTATGCACAAGGGT 588
Query 722 AGTCTTGAGAATCATCT-ATT-CAGAA--GAGGTGCA-TATTTTAAGCCACTCCCATGGT 776
||||||||||||||||| || || || || | | |||||||||| || | |||
Sbjct 589 AGTCTTGAGAATCATCTGTTTGCA-AATGGAAAT-AAGGATTTTAAGCCGCTATCTTGGA 646
Query 777 TTTTACGGATCCAGGTTGCGCTTGATGCAGC-AAAGGGTCTTGCTTTTCTTCACAGCGAT 835
|| ||||||| ||||||| ||||||||||| ||| |||||||| |||||||| || |||
Sbjct 647 TTCTACGGATTAAGGTTGCACTTGATGCAGCTAAA-GGTCTTGCATTTCTTCATAGTGAT 705
Query 836 CCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGATTCGGACTAC 895
||||||||||| || ||| ||||||| || || || ||||||||||| || ||||||| |
Sbjct 706 CCCGTCAAAGTCATTTACAGAGACATCAAGGCGTCAAACATCTTACTGGACTCGGACTTC 765
Query 896 AACGCAAAACTTTCTGACTTTGGACTAGCTAGGGACGGTCCAATGGGTGATTTGAGCTAT 955
|||||||| ||||| |||||||| |||| || |||||||||||||| || || |||
Sbjct 766 AACGCAAAGCTTTCAGACTTTGGTTTAGCGAGAGACGGTCCAATGGGAGAACAAAGTTAT 825
Query 956 GTTAGTACAAGGGTCATGGGTACATATGGCTACGCCGCACCTGAGTACATGTCATCAGGT 1015
||||||||||||||||||||||| | ||| ||||| || |||||||| | ||| ||||
Sbjct 826 GTTAGTACAAGGGTCATGGGTACTTTTGGGTACGCAGCTCCTGAGTATGTCTCAACAGGC 885
Query 1016 CACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAG-TATTGCTTCTAGAGA-TTTTAT 1073
||||| ||||| |||||||| || ||||||||||| | | || || ||||| | | |||
Sbjct 886 CACTTAAATGCTAGAAGCGACGTATACAGTTTCGGGGTTGTT-CTGCTAGA-ACTACTAT 943
Query 1074 CAGGTAA-GCGAGCGTTGGATCATAACAGGCCGGCTAAAGAAG-AAAACCTTGTGGATTG 1131
|| || || ||| | || |||||| | ||||| ||| || ||||||||||||||||
Sbjct 944 GTGG-AAGGCAAGCACTAGACCATAACCGCCCGGC-CAAGGAGCAAAACCTTGTGGATTG 1001
Query 1132 GGCTCGACCATACCTCACAAGCAAACGCAAGGTTCTCCTAATCGTGGACACTCGGCT-AG 1190
||||||||||||||||||||||| || |||||||| ||||| |||||||||||||| |
Sbjct 1002 GGCTCGACCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCTTA- 1060
Query 1191 ACACACAGTACTTACCTGAAGAAGCCGTGAGAGTGGCCAGCATTGCGGTGCAATGTCTCT 1250
|| |||||||| ||| |||| ||| |||||| |||| |||||||| |||||||| || |
Sbjct 1061 ACTCACAGTACAAACCCGAAGGAGCAGTGAGACTGGCAAGCATTGCTGTGCAATGCCTAT 1120
Query 1251 CATTCGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTTGCAACAACTTC 1310
||||||||||||| || || |||||||||||||||||||| || |||||| ||| || |
Sbjct 1121 CATTCGAACCCAAATCACGTCCGACCATGGACCAAGTGGTTCGAGCCTTGGTACAGCTGC 1180
Query 1311 AGGACAACTTGGGAAAACCGAGTCA--G---ACCAA-TCC-GGTTAAGGATACCAAGAAA 1363
| |||| | ||| |||||| | || | ||| | |||||||||||||||||||
Sbjct 1181 AAGACAGCGTGGTTAAACCG-GCCAATGTTGACCCGCTTAAGGTTAAGGATACCAAGAAA 1239
Query 1364 CTTG-GTT-TT-AAAACTG--GTACTAAGTCATCC-GAAAAACGGTTTACACAAAAA 1414
|||| | || ||||| | | || |||| | || || |||||||||| |||||||
Sbjct 1240 CTTGTGGGATTGAAAACAGAAG-AC-AAGT-A-CCAGAGAAACGGTTTAAACAAAAA 1292
> AT3G01300.1 | Symbols: | Protein kinase superfamily protein
| chr3:90598-93585 REVERSE LENGTH=1942
Length=1942
Score = 76.8 bits (41), Expect = 6e-13
Identities = 231/318 (73%), Gaps = 32/318 (10%)
Strand=Plus/Plus
Query 446 AGAAACTTCAGACCAGATAGTGTGATCGGAGAAGGTGGCTTTGGTTGTGTCTTTAAAGGC 505
||||| |||||||| || || | |||||||||||||||||||||||||||| ||||||
Sbjct 650 AGAAATTTCAGACCTGAAAGCCTTCTCGGAGAAGGTGGCTTTGGTTGTGTCTTCAAAGGC 709
Query 506 TGGTTAGATGAGACC--A-CT-CTCACTCCGACTAAACCTGGAACCGGT-TTGGT-TATC 559
||| | || |||| | | || ||| || | ||| ||||| || || || | | |
Sbjct 710 TGGGTCGAGGAGAACGGAACTGCTC-CT--GT-TAAGCCTGGCACTGGCCTTACTGT-T- 763
Query 560 GCCGTTAAAAAGCTTAA--CCAAGAAGGTTTTCAAGGTCACCGTGAATGGCT-GACAGAG 616
||||| |||| ||||| || || || |||| ||||| || ||||| | | |||
Sbjct 764 GCCGTCAAAAC-CTTAAATCCT-GATGGCCTTCAGGGTCATAAAGAGTGGCTTG-CTGAG 820
Query 617 ATCAATTA-CTTGGGGCAAT-TGAGTC-A-CCCAAATCTAGTCAAACTAATCGGGT-ATT 671
|| ||||| ||||| ||| | || | ||||| ||| || ||||| | |||| |||
Sbjct 821 ATTAATTATCTTGGT--AATCTTC-TCCATCCCAA-TCTTGTTAAACTGGT-GGGTTATT 875
Query 672 GCT-TAGAGGATGAACACCGTCTTCTTGTCTACGAGTTTATGCAAAAAGGAAGTCTTG-A 729
| | | || ||||| || | || ||||| || |||||||||| ||||||| ||| |
Sbjct 876 G-TATCGAAGATGATCAAAGGCTGCTTGTATATGAGTTTATGCCTCGAGGAAGT-TTGGA 933
Query 730 GAATCATCTATTCAGAAG 747
|||||| || ||||||||
Sbjct 934 GAATCACCTTTTCAGAAG 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5