BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482988
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39670.2 | Symbols: | Radical SAM superfamily protein | chr... 2433 0.0
AT1G50050.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 156 7e-37
> AT2G39670.2 | Symbols: | Radical SAM superfamily protein | chr2:16534233-16537318
FORWARD LENGTH=1698
Length=1698
Score = 2433 bits (1317), Expect = 0.0
Identities = 1516/1609 (94%), Gaps = 25/1609 (2%)
Strand=Plus/Plus
Query 1 GCAGAGAGGTTTTAGCCGCAGAAGAAAAGGGTTTA------C-TCTT--GTCTTCTCAGT 51
||||||||||||||||||||||||||||||||||| | |||| | |||||||||
Sbjct 1 GCAGAGAGGTTTTAGCCGCAGAAGAAAAGGGTTTACTCTGTCTTCTTCAGACTTCTCAGT 60
Query 52 GATCGAAGCTATGATGACGACAACAACCAATACTATGGCTATGCTTCAAAACCTCGTCTT 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATCGAAGCTATGATGACGACAACAACCAATACTATGGCTATGCTTCAAAACCTCGTCTT 120
Query 112 TTCTGTTCCCATCTCTCGTATGGTAGTTCGGCGTCACTCCCT--CT-CCA---TCGCCGC 165
|||||||| |||||||||||||||||||||||||||||||| || ||| || ||||
Sbjct 121 CTCTGTTCCAATCTCTCGTATGGTAGTTCGGCGTCACTCCCTCGCTACCACCTTCTCCGC 180
Query 166 TGCCGCCACAACCGTCGTACCGTCTCCTAAACCAGCATCTGCCAAACCGGCGCGTACTCC 225
||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 181 TGCCGCCACAACCGTCGTACCGTCTCCTAAACCGGTATCAGCCAAACCGGCGCGTACTCC 240
Query 226 ACACGTGGACTCACATGTTCTCATCGGAATGTCTGAGCCCGAGCTTCAACAGCTCGCTAT 285
||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||
Sbjct 241 ACACGTGGACTCACATGTTCTCATCGGAATGTCAGAGCCTGAGCTTCAAGAGCTTGCTAT 300
Query 286 CAACCTTGTTCTGATTTTTCAAGAAGGGTACAGAGGAAAGCAGCTCCATCATCTTATTTA 345
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 301 CAACCTCGTTCTGATTTTTCAGGAAGGATACAGAGGAAAGCAGCTCCATCATCTTATTTA 360
Query 346 CAAGAGAAAGGTTAATAAAGTTGAAGACTTTAGCAATTTGCCACAGACGTTTCGTAAAGG 405
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CAAGAGAAAGGTTAATAAAGTTGAAGACTTTAGCAATTTGCCACTGACGTTTCGTAAAGG 420
Query 406 ACTTGTGGAAGGTGGATTTAAAGTGGGAAGATCACCCATTTACCAAACTGTTACTGCCAC 465
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTGTGGATGGTGGATTTAAAGTGGGAAGATCACCCATTTACCAAACTGTTACTGCCAC 480
Query 466 TGATGGTACCATTAAGCTTCTGCTAAAGCTTGAAGATAACCTGTTGATTGAAACTGTTGG 525
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 481 TGATGGTACCATTAAGCTTCTGCTAAAGCTTGAAGATAACCTATTGATCGAAACTGTTGG 540
Query 526 TATACCGGTTCAAGATGATGAGAAGGGCATAACGCGCCTCACTGCTTGTGTCTCTTCCCA 585
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 TATACCAGTTCAAGATGATGAGAAGGGCATAACGCGCCTCACCGCTTGTGTCTCTTCCCA 600
Query 586 GGTTGGATGTCCG-TTGCGTTGCTCGTTCTGTGCCACTGGAAAAGGAGGGTTTTCAAGAA 644
||||||||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct 601 GGTTGGATGTCCGCTT-CGTTGTTCGTTTTGTGCCACGGGAAAAGGAGGCTTTTCAAGAA 659
Query 645 ATCTTCAGCGACATGAAATTATTGAGCAGGTACTGGCTATTGAGGATGTGTTCAAGCATA 704
|||| ||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 660 ATCTGCAGCGCCATGAAATTATTGAGCAGGTGTTGGCTATCGAGGACGTGTTCAAGCATA 719
Query 705 GAGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTAC 764
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTAC 779
Query 765 TTGATGCTCATCGTTGTTTGAACAAGGACATTGAAATCGGACAACGAATGATTACAATAT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGATGCTCATCGTTGTTTGAACAAGGACATTGAAATCGGACAACGAATGATTACAATAT 839
Query 825 CGACAGTAGGTGTTCCGAACACAATCAAGAAGCTTGCCTCTCATAAGCTGCAGTCAACCT 884
|||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 840 CGACTGTAGGTGTTCCAAACACAATCAAGAAGCTTGCATCTCATAAGCTTCAGTCGACCT 899
Query 885 TAGCTGTCAGCTTACATGCGCCAAATCAGAGTCTCCGGGAGAAAATTGTACCAAGTGCCA 944
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 900 TAGCTGTCAGCTTACATGCGCCAAATCAGAGCCTCAGGGAGAAAATTGTACCAAGTGCCA 959
Query 945 AGGCTTATCCGCTGGAAGCAATTATGAAGGATTGTCGTGATTACTTCCAAGAAACAAATA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGGCTTATCCGCTGGAAGCAATTATGAAGGATTGTCGTGATTACTTCCAAGAAACAAATA 1019
Query 1005 GACGAGTCTCCTTCGAATATGCCCTTCTAGCTGGAGTCAATGATCAAGTTGAGCATGCAG 1064
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 GACGAGTCTCTTTCGAATATGCCCTTCTAGCTGGAGTCAATGATCAAGTTGAGCATGCGG 1079
Query 1065 TGGAACTTGCAGAACTACTCCGTGAATGGGGTAAAACTTATCACGTAAATTTGATACCTT 1124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGAACTTGCAGAGCTACTCCGTGAATGGGGTAAAACTTATCACGTAAATTTGATACCTT 1139
Query 1125 ACAACCCGATAGAAGGATCAGAGTACAAGCGACCTTACAAGAAAGCGGTCCTAGCGTTTG 1184
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 ACAACCCGATAGAGGGATCAGAGTACCAGCGACCTTACAAGAAAGCGGTCCTAGCGTTTG 1199
Query 1185 CATCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGACAAACAAGAGGACTTGATG 1244
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 CAGCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTGATG 1259
Query 1245 CGAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTTTAG-TTACTGAG 1303
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1260 CAAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTTT-GCTTACTGAG 1318
Query 1304 ACGGATGGTCAAGAGTCTCAGCCAGCTGCAGAAGCTGTCGCGTGTTGATTTCCTTGATTG 1363
|||||| |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||
Sbjct 1319 ACGGATAGTCAAGAGTCTCAGCCAGATGCAGAAGCTGTCGCTTGTTGATGTCCTGGATTG 1378
Query 1364 CACAAATCTCCGGTTTTGCCATTGGATCGCTCTGTACAACTTTGTTTTGGAGAGGAGACA 1423
||||||| ||||||||||||||||||| ||||||| |||||||| |||| ||||||||||
Sbjct 1379 CACAAATTTCCGGTTTTGCCATTGGATGGCTCTGTTCAACTTTGGTTTGAAGAGGAGACA 1438
Query 1424 TGGCTCAATGACGAAAAGTGAAAATT-GCCGTTAGGGTTGGTTGGTCAGTGTGCAACCGA 1482
||||||||| ||| |||| ||||| | | ||| ||||||||||||||||||||||||| |
Sbjct 1439 TGGCTCAATCACGGAAAG-GAAAAATCGTCGTGAGGGTTGGTTGGTCAGTGTGCAACCAA 1497
Query 1483 GGATGAAGAGATTGAAGCACGTTTGAGAAGTGA-GTACTTTGACGATAGATGTGATGATA 1541
|||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||
Sbjct 1498 GGATGAAGAGATTGAAGCACGTTTGAGATGTGACG-ACTTTGACGATAGGTGTGATGATA 1556
Query 1542 T--ACTTTGGTTTATAACTATGACAAGGTAACTAACTTAAAGTGTTGTT 1588
| ||||||||| |||| |||||||||| |||||||||||||| |||||
Sbjct 1557 TTTACTTTGGTTAATAATTATGACAAGGGAACTAACTTAAAGTATTGTT 1605
> AT1G50050.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr1:18546165-18549046 FORWARD LENGTH=681
Length=681
Score = 156 bits (84), Expect = 7e-37
Identities = 105/114 (92%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 1183 TGCATCTGC-G--TTGGAGTCGCGTAAGATAACAGCAAGCGTAAGACAAACAAGAGGACT 1239
||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 453 TGCATCTGCTGCATTGAAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACT 512
Query 1240 TG-ATGCGAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTT 1292
|| | ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 513 TGGA-GCGAGTGCTGCTTGTGGTCAGTTGAGAAATAAGTTTCAGAAAAGCCCTT 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5