BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482989
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39690.1 | Symbols: | Protein of unknown function, DUF547 |... 2436 0.0
AT3G47675.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 287 3e-76
> AT2G39690.1 | Symbols: | Protein of unknown function, DUF547
| chr2:16541084-16543338 FORWARD LENGTH=1584
Length=1584
Score = 2436 bits (1319), Expect = 0.0
Identities = 1482/1560 (95%), Gaps = 13/1560 (1%)
Strand=Plus/Plus
Query 69 AGAGACTAGAGGAAGAAGAAGCAGTAAGTAGAACTTTACGAGCTGCTTTTGATGGTTCTA 128
||||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||
Sbjct 30 AGAGACTAGAGGAAGAAGAAGCAGTGACTAGAACTTTACGAGTTGCTTTTGATGGCTCTA 89
Query 129 TTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGTTTTCCGAGCTTATAC 188
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 90 TTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGTTTTCTGAGCTCATAC 149
Query 189 AAGAATTAGCCGTCGTGGAGGCAGAGATTCTTTGTCTAGACCGAAAAATCGAGGAGCTAA 248
||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 150 AAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTCTAGACCGAAAAATCGAGGAGCTAA 209
Query 249 AGCTTAAACTGTATTACGAACAGAGACAAACGCAAGAGATGCAA-T-----TGACCGAGC 302
||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||
Sbjct 210 AGCTTAAACTGTATTCCGAACAGAGACAAACGCAAGAGATACAATTGCAGATGACCGAGC 269
Query 303 AGAAGAGGACATTGGCAAGACAGAGCCATGTGAGACAGAGTACTTTGCCACTAAGACATG 362
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 270 AGAAGAGGACATTGGCAAGACAGAGCCATGTGAGACAGAGTACTCTGCCACTAAGACATG 329
Query 363 ATCTTCATCAACGATCTTTGTCTCATTGCTACCAACGTTCTACTCTAGACACCGCCTCAA 422
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 330 ATCTTCATCAACGATCTTTGTCTCATTGTTACCAACGTTCTACACTAGACACTGCCTCAA 389
Query 423 CAACTCATTCAAGGCTCTCATTTTCTTATGCTCCTGATTTCTTGGATACCACTTCTTCAG 482
| ||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 390 CTACTCATTCAAGACTCTCATTCTCTTACGCTCCTGATTTCTTGGATGCCACTTCTTCAG 449
Query 483 GTTGCTTCACAGATGAATTTGATGCAGT-ATCGAGGATGCAGATGGGTAGAGTAAGAAAA 541
|| |||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 450 GTGGCTTCACAGACGAATTTGATGGAGTCA-CGAGGATGCAGATGGGTAGAGTAAGAAAA 508
Query 542 GGGCTTCGACTTGTGGAAGCAAA-AACAAAGGACGATCCAAACGAAGTATCTGAACAACT 600
|||||||||||||| |||||||| | |||| ||||| |||||||||||||| ||||||||
Sbjct 509 GGGCTTCGACTTGTTGAAGCAAAGACCAAA-GACGACCCAAACGAAGTATCAGAACAACT 567
Query 601 CATCAACTGTCTTATAGGCATTTACTTGGAACTCAATCATGTTTCATCAAAGACCAAAGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CATCAACTGTCTTATAGGCATTTACTTGGAACTCAATCATGTTTCATCAAAGACCAAAGG 627
Query 661 GGATGTCTCGCTTTCGAGAAGGCCCTCTTCTTGTAGCCGGAAATCAAACACATATAGTTA 720
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 628 GGATGTCTCGCTCTCAAGAAGGCCATCTTCTTGTAGCCGGAAATCAAACACATATAGTTA 687
Query 721 TTATCAAAATGCAATGAATCTTGATCCTTATCACGTATTGCAAGACTCAAGCGGAGGAGT 780
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 688 TTATCAAAATGCAATGAATCTTGATCCTTATCACGTATTGCCAGACTCGAGCGGAGGAGT 747
Query 781 CACCAGAGACATTGGCCCTTACAAGAACTTCATCCACATTTCAAGAAGTTCTATCGATGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 748 CACCAGAGACATTGGCCCTTACAAGAACTTCATCCACATTTCAAGAAGTTCCATCGATGT 807
Query 841 GACTCGTTTCACCCATTATTGTTCACCGGCTGTTCCACGCTTGAGTATTTTGATGGAGAA 900
||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 808 GACACATTTCACCCATTATTGTTCACCGGCTGTTCCACGCTTGAGCGTTTTGATGGAGAA 867
Query 901 ACTATCGGAGGTAGATTTGAGTTTTTTGACCTACAAGCAAAAACTCGCCTTCTGGATCAA 960
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 868 ATTATCGGAGGTAGATTTGAGTTTTTTGACCTACAAGCAAAAACTAGCCTTCTGGATCAA 927
Query 961 TATCTACAACGCATGTATCATGCATGCTTTTCTTGAGTATGGGTTACCATCATCACACAA 1020
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 928 TATCTACAACGCATGTATCATGCATGCATTTCTTGAGTATGGGTTACCATCGTCACACAA 987
Query 1021 TAGACTACTTACCTTGATGAACAAGGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TAGACTACTTACCTTGATGAACAAGGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGC 1047
Query 1081 TTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAACATAAGGACTCGCT 1140
|||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 1048 TTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT--G-ACTCGCT 1104
Query 1141 TGATGAGAAAGAAACTCTCCTGCGACATACTTATGGTTTAGGATATTCAGAGCCCAACGT 1200
||| ||||||||||| ||||| || || ||||| ||||||||||||||||||||||| ||
Sbjct 1105 TGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGATATTCAGAGCCCAATGT 1164
Query 1201 GACATTTGCGCTTTGTCGCGGAAGTTGGTCTTCACCAGCACTTAGAGTTTATACAGCAGA 1260
||||||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1165 GACATTTGCACTTTGCCGTGGAAGTTGGTCTTCACCAGCACTAAGAGTCTATACAGCAGA 1224
Query 1261 GGAAGTGGTGAATGATTTAGGAAGAGCAAGAGTGGAATATCTAGAAGCTTCCGTGGGTGT 1320
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1225 TGAAGTGGTGAATGATTTAGGAAGAGCAAGAGTGGAATATCTAGAAGCTTCTGTGGGTGT 1284
Query 1321 TTCTAGCAAGAAAAAGATTGTGGTTCCACAGCTTCTGCAATGGCACATGAAAGATTTTGC 1380
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 TTCAAGCAAGAAAAAGATTGTGGTTCCACAGCTTCTGCAATGGCACATGAAAGATTTTGC 1344
Query 1381 AGATGATATTGAATCCCTTTTGGAATGGATCTATAGCCAGTTACCTCGATCAGGCAACCT 1440
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1345 AGATGATATTGAATCTCTTTTGGAATGGATCTATAGCCAGTTGCCTCGATCAGGGAACCT 1404
Query 1441 AAAGGGCATGATTATGGAATGTTTAAAGAGAAAAACAAAAGTTCCTTTAGCTAAAATGGT 1500
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct 1405 AAAGGGCATGATTATGGAATGTCTAAAGAGAAAAGCAAAAGTTCCTTTAGCTAAAATTGT 1464
Query 1501 AGAGATTCAAACATATGGACACGAATTTCGTTACTTGTTGTCATTATAAACATGAGAGGT 1560
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1465 AGAGATTCAAACATATGGACACGAATTTCGTTACTTGTTGTCATTGTAAACATGAGAGGT 1524
Query 1561 CCTTATCTAGAATAGAATAACAATGTTTGGTAACTTCTCTCACGGATGTACACATTCTCG 1620
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1525 CCTTATCTAGAATAGAATAACAATGTTTGGTAACTTCTCTCTCGGATGTACACATTCTCG 1584
> AT3G47675.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Protein of unknown function, DUF547
(TAIR:AT2G39690.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr3:17576004-17576537 REVERSE
LENGTH=388
Length=388
Score = 287 bits (155), Expect = 3e-76
Identities = 232/265 (88%), Gaps = 21/265 (8%)
Strand=Plus/Plus
Query 1 AATTTGAGGAACTACTCATGGAAG---CTTCACAGCAACAAAGCAACAAGAGACATGACT 57
|||||||||||||||||||||||| | ||||||| ||| || ||||||||||||||||
Sbjct 5 AATTTGAGGAACTACTCATGGAAGATTCATCACAGCTACATAGTAACAAGAGACATGACT 64
Query 58 TAGAGG-A--A--G--G--------A-AGAGACTAGAGGAAGAAGAAGCAGTAAGTAGAA 101
|||||| | | | | | ||||||||||||||||||||||||| | |||||
Sbjct 65 TAGAGGAAGGAGTGATGCATCTTAAAGAGAGACTAGAGGAAGAAGAAGCAGTGACTAGAA 124
Query 102 CTTTACGAGCTGCTTTTGATGGTTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTC 161
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 125 CTTTACGAGCTGCTTTTGATGGCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTC 184
Query 162 TTCCACCTCAGTTTTCCGAGCT-TATACAAGAATTAGCCGTCGTGGAGGCAGAGATTCTT 220
|||||||||||||||| ||||| | | |||||||||||| ||||||||||||||||||||
Sbjct 185 TTCCACCTCAGTTTTCTGAGCTCTTT-CAAGAATTAGCCATCGTGGAGGCAGAGATTCTT 243
Query 221 TGTCTAGACCGAAAAATCGAGGAGC 245
||||||||| |||||||| ||||||
Sbjct 244 TGTCTAGACAGAAAAATCAAGGAGC 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81826888350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5