BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482991
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39700.1 | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4... 1951 0.0
AT3G55500.1 | Symbols: ATEXPA16, EXP16, ATEXP16, ATHEXP ALPHA 1... 638 0.0
> AT2G39700.1 | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4
| expansin A4 | chr2:16543832-16545584 REVERSE LENGTH=1338
Length=1338
Score = 1951 bits (1056), Expect = 0.0
Identities = 1231/1309 (94%), Gaps = 38/1309 (3%)
Strand=Plus/Plus
Query 1 AACAAACCTAACTCTTTCTCTATACAAGAGCGCAACCTCGAAAGCGCTCTTGTTCTTTCT 60
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 21 AACAAACCTAACTCTTTCTCTATACAAGAGCGCAAGCTCGAAGGCGCTCTTGTTCTTTCT 80
Query 61 TCATTTTCTCCTTAAGAATCACCCTCATAGTAATTTTAGAACTCTCCT-TTT-TAGTAAA 118
||||||||||||||| ||||||||||||||||| |||| |||||| || ||| |||| ||
Sbjct 81 TCATTTTCTCCTTAACAATCACCCTCATAGTAACTTTAAAACTCT-CTGTTTCTAGT-AA 138
Query 119 TT-ACACTCAAAATGGCTATTAAACTAGTAATTCTCTTTACCACATTTGTCCTTTTTAGC 177
|| |||| |||||||||||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 139 TTCACACACAAAATGGCTATTAAACTAGCAATTCTATTTACCACATTTGTTCTTTTTAGC 198
Query 178 CTCGCCGACGCTAGAATCCCCGGCGTTTACTCCGGCAGCGCATGGCAAAACGCACACGCC 237
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 199 CTCGCCGACGCTAGAATCCCCGGTATTTACTCCGGCGGCGCATGGCAAAACGCACACGCC 258
Query 238 ACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCTTGTGGTTACGGTAAC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCTTGTGGTTACGGTAAC 318
Query 298 CTATACAGCCAAGGCTATGGTACCAACACGGCAGCATTGAGCACGGCGCTGTTTAACAAT 357
|||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||||
Sbjct 319 CTATACAGCCAAGGGTACGGGACCAACACGGCTGCTTTGAGTACGGCGCTGTTTAACAAT 378
Query 358 GGTATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGACCCTCAATGGTGCCAC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 379 GGTATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGACCCTCAATGGTGTCAC 438
Query 418 TCAGGTAGTCCTTCGATCCTCATCACCGCAACCAATTTCTGCCCACCAAACTTGGCTCAG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCAGGTAGTCCTTCGATCCTCATCACCGCAACCAATTTCTGCCCACCAAACTTGGCTCAG 498
Query 478 CCTAGCGACAACGGAGGATGGTGTAACCCGCCTCGTGAACA-TTTCGATCTAGCCATGCC 536
||||||||||||||||||||||| ||||| || |||||||| ||| || |||||||||||
Sbjct 499 CCTAGCGACAACGGAGGATGGTGCAACCCACCACGTGAACACTTT-GACCTAGCCATGCC 557
Query 537 TGTCTTCCTCAAGATCGCTCAATATCGTGCGGGCATTGTCCCCGTCTCATACCGCAGAGT 596
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 558 TGTCTTCCTTAAGATCGCTCAATATCGCGCCGGCATTGTCCCCGTCTCATACCGCAGGGT 617
Query 597 GCCTTGTAGAAAGAGAGGAGGGATAAGGTTCACAATCAACGGTCACCGTTACTTCAACTT 656
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 618 GCCATGTAGAAAGAGAGGAGGCATAAGGTTCACAATCAACGGTCACCGTTACTTCAACTT 677
Query 657 GGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGAGGGCTAGTGTGAAAGGTTC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 678 GGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGAGGGCTAGTGTGAAAGGATC 737
Query 717 ACGGACTGGTTGGATGAGTTTGAGCAGGAACTGGGGACAAAACTGGCAATCTAATGCTGT 776
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 738 ACGGACTGGTTGGATGAGTTTGAGCAGAAACTGGGGACAAAACTGGCAATCTAATGCTGT 797
Query 777 TTTGGTTGGTC-AGTCACTTTCTTTCCGTGTCACAGGCAGTGACCGTAGAACATCTACTT 835
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TTTGGTTGGTCAAG-CACTCTCTTTCCGTGTCACAGGCAGTGACCGTAGAACATCTACTT 856
Query 836 CCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACCTTTGTCGGGAAGAATTTCA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACCTTTGTCGGGAAGAATTTCA 916
Query 896 GGGTTTAAGGCGAGTTTCGAGAAGCAAAAATTTGGAGGAAAT-CGA-AAATTTAAAGTGG 953
||||||||||||||||||||||| | |||||||||||||||| ||| ||||| |||||||
Sbjct 917 GGGTTTAAGGCGAGTTTCGAGAAACTAAAATTTGGAGGAAATTCGAGAAATT-AAAGTGG 975
Query 954 TTCGAGACAAAAGAAAACTCTCCGCTAATTTCGCTATTCCTCCt--ttttttt---CTAA 1008
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 976 TTCGAGACAAAAGAAAACTCTCCGCTAATTTCGCTATTCCTCCTCCTTTTTTTTTACTAA 1035
Query 1009 ATTTTACATATGGGAAGGAGAGAAAAATCAGGGGAAAGTATCTTTGACttttgtgtgtgt 1068
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ATTTTATATATGGAAAGGAGAGAAAAATCAGGGGAAAGTATCTTTGACTTTTGTGTGTGT 1095
Query 1069 tttcacttttttttttaatgttcttttttttGGGTTTGGTGTTGTAATTGTGAGTGATA- 1127
|||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1096 TTTCACTTTTTT----AATGTTTTTTTTTTTGGGTTTGGTGTTTTAATTGTGAGTGATAA 1151
Query 1128 -G----A---GA---A-A--GAGAAAGTGAGTAGCTGAAGTGGCTGTGAGAAAATTTTGT 1173
| | || | | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1152 AGGGGGAAATGAGGGAGAAAGAGAAAGTGAGTAGCTGAAGTGGCTGTGAGAACATTTTGT 1211
Query 1174 AACAGCCCGCAGCTATTAAAGTATTTTACATG-TTTGGTTGTAAGTTACAACTTGTAACG 1232
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1212 AACAGCCCGCAGCTATTAAAGTATTTTACATGGTTTGGTTGTAAGTTACAACTTGTAACG 1271
Query 1233 TTTAATCTCGTGTAATCT-AAAACATGGTTGTGTTATTGATACTTAATA 1280
|||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1272 TTTAATCTCGTGTAATCTTAAAACATGGTTGTATTATTGATACTTAATA 1320
> AT3G55500.1 | Symbols: ATEXPA16, EXP16, ATEXP16, ATHEXP ALPHA
1.7, EXPA16 | expansin A16 | chr3:20574831-20576182 REVERSE
LENGTH=1105
Length=1105
Score = 638 bits (345), Expect = 0.0
Identities = 616/747 (82%), Gaps = 17/747 (2%)
Strand=Plus/Plus
Query 167 TCCTT-T-TT-AGCCTCGCCGACGCTAGAATCCCCGGCGT-TTACTCCGGCAGCGCATGG 222
||||| | || ||| || ||||||| ||||||| | || || ||| || | | |||
Sbjct 124 TCCTTCTCTTGAGCTTCACCGACGCCGGAATCCCTAGAGTCTT-CTCAGGTGGTTCTTGG 182
Query 223 CAAAACGCACACGCCACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCT 282
|||| ||| ||||||||||| |||||||| | ||| || || || |||||||| || ||
Sbjct 183 CAAACCGCTCACGCCACTTTCTACGGTGGAAACGATGCTTCGGGAACAATGGGTGGCGCG 242
Query 283 TGTGGTTACGGTAACCTATACAGCCAAGGCTATGGTACCAACACGGCAGCATTGAGCACG 342
||||| ||||| || || || |||||||| || || || |||||||| || |||||||
Sbjct 243 TGTGGATACGGGAATCTGTATAGCCAAGGATACGGAACAAACACGGCGGCGCTGAGCACA 302
Query 343 GCGCTGTTTAACAATGGT-ATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGA 401
|| ||||||||| |||| | || || || || ||||| || | ||||| | ||| ||
Sbjct 303 TCGTTGTTTAACAGTGGTCA-AAGCTGCGGCGCATGCTTCGAAATCAAATGTGTCAATGA 361
Query 402 -CCCTCAATGGTGCCACTCAGGTAGTCCTTC-GATCCTCATCACCGCAACCAA-TTTCTG 458
||| ||||||| ||| | |||| |||||| | || || | ||||||||||| ||| ||
Sbjct 362 TCCC-AAATGGTGTCACCCGGGTAATCCTTCTG-TCTTCGTAACCGCAACCAACTTT-TG 418
Query 459 CCCACCAAACTTGGCTCAGCCTAGCGACAACGGAGGATGGTGTAACCCGCCTCG-TGAAC 517
||| |||||||| || |||||||||||||| || || ||||| |||||||| || | |
Sbjct 419 CCCTCCAAACTTAGCCCAGCCTAGCGACAATGGTGGCTGGTGCAACCCGCCACGCT-CTC 477
Query 518 ATTTCGATCTAGCCATGCCTGTCTTCCTCAAGATCGCTCAATATCGTGCGGGCATTGTCC 577
||||||| || |||||||| || ||||||||||||||| | |||||||| ||||||||||
Sbjct 478 ATTTCGACCTCGCCATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTCC 537
Query 578 CCGTCTCATACCGCAGAGTGCCTTGTAGAAAGAGAGGAGGGATAAGGTTCACAATCAACG 637
|| |||| |||||||| ||| | ||||| ||||| ||||||||||||||||| |||||||
Sbjct 538 CCATCTCTTACCGCAGGGTGGCATGTAGGAAGAGTGGAGGGATAAGGTTCACGATCAACG 597
Query 638 GTCACCGTTACTTCAACTTGGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGA 697
|||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| ||
Sbjct 598 GTCACCGTTACTTCAACTTGGTGCTGATTACGAACGTGGCCGGAGCAGGAGACATCGCGA 657
Query 698 GGGCTAGTGTGAAAGGTTCACGGACTGGTTGGATGAGTTTGAGC-AGGAACTGGGGACAA 756
|| | ||||||||||||||| |||||||||||||||||| | | ||||||||||||||
Sbjct 658 GGACGAGTGTGAAAGGTTCAAAGACTGGTTGGATGAGTTTAA-CTAGGAACTGGGGACAG 716
Query 757 AACTGGCAATCTAATGCTGTTTTGGTTGGTCAGTCACTTTCTTTCCGTGTCACAGGCAGT 816
|||||||| |||||||||||| | ||||||||||||||||| |||||||| ||| |||
Sbjct 717 AACTGGCAGTCTAATGCTGTTCTCGTTGGTCAGTCACTTTCCTTCCGTGTTACATCCAGC 776
Query 817 GACCGTAGAACATCTACTTCCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACC 876
|| |||||||| |||||||| |||||||| | |||||| |||||||||||||| ||||||
Sbjct 777 GATCGTAGAACCTCTACTTCATGGAACATCGCTCCTTCGAACTGGCAGTTTGGACAAACC 836
Query 877 TTTGTCGGGAAGAATTTCAGGGTTTAA 903
|||||||| |||||||||||||| |||
Sbjct 837 TTTGTCGGAAAGAATTTCAGGGTCTAA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5