BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482992
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39705.1 | Symbols: RTFL8, DVL11 | ROTUNDIFOLIA like 8 | chr... 891 0.0
> AT2G39705.1 | Symbols: RTFL8, DVL11 | ROTUNDIFOLIA like 8 | chr2:16556856-16557577
FORWARD LENGTH=722
Length=722
Score = 891 bits (482), Expect = 0.0
Identities = 650/724 (90%), Gaps = 40/724 (6%)
Strand=Plus/Plus
Query 1 GCTGACTCAAATCTCCAAACTCCGAGAAAATCTCCAAATTCCTAAGTTTGttt-ttt-tt 58
||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |
Sbjct 1 GCTGACTCAAATCTCCAAACTCCTAGAAAATCTCCAAATTCCCAAGTTTGTTTCTTTAAT 60
Query 59 ATATCTATTCCTCACAAATTCGTCAATTTCCAACGAACCCACAAGATAAAATATTTATCC 118
| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTCTCTATTCCTCACAAACTCATCAATTTCCAACGAACCCACAAGATCAAATATTTATCC 120
Query 119 TTTTTTCCTCGTTGGGATCGATcacacacacacaACATCTGAAATCTGAGATCTTTAACA 178
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TTTTTTCCTCGTTGAGATCGATCACACACACACAA-ATCTGAAATCTGAGATCTTTAACA 179
Query 179 TCAATGGCGTCGTCTTCAAGCCTGACTCGATCGGGAAGCGTTCACCTAGATGAGAAGTGG 238
||||||||||| || || ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 180 TCAATGGCGTCATCGTCTAGCCTGACTCGATCGGGAAGCGTCCACCTAGACGAGAAGTGG 239
Query 239 AAACTGTCGAAGAAAGACGGCGGCGCGTCGAGAATCACGCGCTCTTCATCGACCTCATCT 298
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 AAACTGTCAAAGAAAGACGGCGGCGCGTCGAGGATCACGCGCTCTTCATCGACCTCATCT 299
Query 299 TCTTCCTTCAACGGCAAGAAACAGGGGAGATGTGCTTTTACGAGAAAGTGTGCAAGATTG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTCCTTCAACGGCAAGAAACAGGGGAGATGTGCTTTTACGAGAAAGTGTGCAAGATTG 359
Query 359 GTTAAAGAACAGAGAGCTCGTTTCTATATCATGCGTCGATGCGTTATCATGCTTATTTGC 418
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 360 GTTAAAGAACAGAGAGCTCGTTTCTACATCATGCGTCGATGCGTAATCATGCTTATTTGC 419
Query 419 TGGAGAGATAATTACTCTGATTCTTaaaaaaaaCAAAATA--CTAAATCTCTCTCT---- 472
||||||||||||||||||||||||||||||||| |||| | | ||||||||||||
Sbjct 420 TGGAGAGATAATTACTCTGATTCTTAAAAAAAAAAAAAAAAACCAAATCTCTCTCTGTTT 479
Query 473 CTT--T--CT--G-----A--------AA-CCGAAGTAGATAGATATGATACATGTACAT 512
||| | || | | || || |||||||||| ||| ||||||||||||
Sbjct 480 CTTGATTTCTCTGTTTCTATGTTTCTGAAACCAAAGTAGATAGTTATAATACATGTACAT 539
Query 513 AA-GGGTTCTGTTTTCTTTTG-TTGTGTACTTCTTTAGATGAATTTTAGATTTTGTTTAC 570
|| |||||||||||||| ||| || | |||||||||||||||| |||||||||||||||
Sbjct 540 AAAGGGTTCTGTTTTCTGTTGGTT-TCTACTTCTTTAGATGAACTTTAGATTTTGTTTAT 598
Query 571 CATTCTGGTTAGAGAAGCTTTGTTTAAGATCAGTTTCAGCGTGAAGGaaaa-aaaaaTAA 629
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||
Sbjct 599 GATTCTGGTTAGAGAAGCTTTGTTTAAGATCAGTTCCAGTGTGAAGGAAAATAAAAAAAA 658
Query 630 ---GAA---CAGACAAATTGTAAAATAAGTTAAT-AAGTATAAAATAGTGAATTAGATTC 682
||| |||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 659 AACGAAGAACAGACAAATTGTAAAATATTTTAATCAAGTATAAAATAGTGAATTAGATTC 718
Query 683 GTCT 686
||||
Sbjct 719 GTCT 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33204771167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5