BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482993
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39710.1 | Symbols: | Eukaryotic aspartyl protease family p... 2030 0.0
> AT2G39710.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr2:16561788-16563380 REVERSE LENGTH=1593
Length=1593
Score = 2030 bits (1099), Expect = 0.0
Identities = 1301/1399 (93%), Gaps = 11/1399 (1%)
Strand=Plus/Plus
Query 10 TCATCATCATCTCTTTC-AAATTTGTTTCTTCGAATCTCAATTCTACTTCTCATTTTCCC 68
||||||| ||||||||| ||| | ||||||||||||||| |||||||||| ||||||||
Sbjct 23 TCATCATTATCTCTTTCAAAAAAT-TTTCTTCGAATCTCAGTTCTACTTCTTATTTTCCC 81
Query 69 TCTCACGTTATGCAAAACATCTTCTTCAGATCAAACACTACTCTTCTCTCTCAAAACACA 128
||| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 82 TCTAACGTTCTGCAAAACATCTTCTACAAATCAAACACTACTCTTCTCTCTCAAAACACA 141
Query 129 GAAACTTCCTCAGTCTTCTTCAGACAAGCTTTCATTCAGACACAATGTTACTCTCACGGT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 142 GAAACTTCCTCAGTCTTCTTCAGACAAGCTTTCATTCAGACACAATGTTACTCTCACCGT 201
Query 189 CACTCTCGCCGTCGGCTCTCCACCGCAAAATATCTCGATGGTTCTTGATACCGGAAGCGA 248
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 202 CACTCTCGCCGTCGGCGATCCACCTCAAAATATCTCGATGGTTCTTGATACCGGAAGCGA 261
Query 249 GCTTTCATGGCTTCACTGCAAGAAATCTCCAAACTTAGGATCCGTTTTTAACCCGGTTTC 308
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GCTCTCATGGCTTCACTGCAAGAAATCTCCAAACTTAGGATCCGTTTTTAACCCGGTTTC 321
Query 309 ATCCTCTACGTACTCTCCAGTACCTTGCTCCTCACCAATTTGCAGGACCCGGACCCGGGA 368
||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct 322 ATCCTCTACGTACTCCCCTGTGCCTTGCTCCTCACCAATTTGCAGGACCCGTACCCGGGA 381
Query 369 TTTACCCATACCCGCTTCATGCGATCCGAAGACCCATCTCTGTCACGTGGCAATCTCTTA 428
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 382 TTTACCCATACCCGCTTCATGCGATCCGAAGACCCATCTCTGCCACGTGGCTATCTCCTA 441
Query 429 CTCTGACGCTACCTCAATTGAAGGTAACTTAGCTCACGACACGTTCGTAATCGGGTCTGT 488
| |||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 442 CGCTGACGCTACATCAATCGAAGGCAACTTGGCTCATGAGACGTTCGTAATCGGGTCTGT 501
Query 489 GACCCGACCCGGTACCTTATTCGGGTGTATGGACTCAGGTTTAAGCTCTGATTCGGAGGA 548
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 502 GACCCGACCCGGTACTTTATTCGGGTGTATGGACTCAGGTTTAAGCTCCAATTCGGAGGA 561
Query 549 AGACGCTAAATCGACCGGTTTAATGGGAATGAACCGGGGATCTTTATCTTTTGTTAACCA 608
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGATGCTAAATCGACCGGTTTAATGGGAATGAACCGGGGATCTTTATCTTTTGTTAACCA 621
Query 609 GCTAGGTTTCTCAAAATTCTCGTATTGCATCTCCGGTTCAGATTCCTCCGGTATTTTGCT 668
||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 622 GCTGGGTTTCTCAAAATTTTCGTATTGCATATCCGGTTCAGATTCCTCCGGTTTTTTGCT 681
Query 669 TCTCGGTGACGCGTCTTATTCCTGGCTCGGTCCAATCCAATACACGCCTTTGGTTCTCCA 728
||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 682 TCTCGGTGACGCGTCCTACTCCTGGCTCGGTCCAATCCAATATACGCCTCTGGTTCTACA 741
Query 729 AACGACACCATTACCGTATTTCGACCGGGTTGCTTACACGGTCCAATTAGAAGGAATCCG 788
| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 ATCGACGCCGTTACCTTATTTCGACCGGGTTGCTTACACGGTCCAATTAGAAGGAATCCG 801
Query 789 GGTTGGGTCAAAGATACTTTCTTTACCGAAATCCGTATTCGTACCGGACCATACCGGAGC 848
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 802 GGTCGGGTCAAAGATACTTTCTTTACCGAAATCTGTATTCGTACCGGATCATACCGGAGC 861
Query 849 CGGTCAGACCATGGTGGATTCAGGTACACAATTTACGTTCCTAATGGGTCCGGTTTACAC 908
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 862 AGGTCAGACGATGGTGGATTCAGGTACCCAATTTACGTTCCTAATGGGTCCGGTTTACAC 921
Query 909 TGCCTTAAAAAACGAGTTTATCGCGCAAACCAAATCGGTTCTCAGAATAGTAGACGACCC 968
||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 922 TGCCTTAAAAAACGAGTTTATTACGCAAACCAAATCGGTTCTCAGGCTTGTAGACGACCC 981
Query 969 GAATTTTGTGTTCCAAGGGACAATGGACCTATGTTACCGGGTTGGATCGTCAACCCGGCC 1028
| |||| ||||||||||||||||||||||| |||||| |||||| || | || |||||
Sbjct 982 GGATTTCGTGTTCCAAGGGACAATGGACCTTTGTTACAAGGTTGGGTCAACGACACGGCC 1041
Query 1029 CAATTTCACAGGTTTACCCGTGATTAGTTTAATGTTCCGTGGCGCGGAGATGAGTGTGTC 1088
||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1042 CAATTTCTCGGGTTTACCCATGGTTAGTTTAATGTTCCGTGGCGCGGAGATGAGTGTGTC 1101
Query 1089 GGGTCAGAAACTGTTGTACCGGGTAAACGGAGCCGGGTCGGAAGGAAAAGAGGAAGTGTA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1102 GGGTCAGAAACTGTTGTACCGGGTAAACGGAGCCGGGTCGGAAGGAAAAGAAGAAGTATA 1161
Query 1149 TTGCTTCACATTTGGAAACTCTGATCTTTTGGGAATAGAAGCATTTGTTATAGGTCACCA 1208
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1162 TTGCTTCACGTTTGGGAACTCTGATCTTTTGGGGATAGAAGCATTTGTTATAGGTCACCA 1221
Query 1209 TCATCAGCAAAACGTGTGGATGGAGTTTGATTTAGCTAAATCAAGGGTTGGTTTTGCTGG 1268
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1222 TCATCAGCAAAACGTGTGGATGGAGTTTGATTTAGCTAAATCAAGGGTTGGTTTCGCTGG 1281
Query 1269 TAACGTTAGATGTGATCTAGCTAGTCAACGGCTCGGATTAAGAGATTGATAGGACTTGTT 1328
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 TAACGTCAGATGTGATTTAGCTAGTCAACGGCTCGGATTAAGAGATTGATAGGACTTGTT 1341
Query 1329 TAAGTC----GTAT-GTG-GAAA-ATGAGAATATTTTCTAGACCAA--ATACATTTATAT 1379
|||||| || | ||| | | |||||||||| |||||||||| |||| ||| |||
Sbjct 1342 TAAGTCTTCTGTGTCGTGTGTGACATGAGAATATCTTCTAGACCATTGATACGTTTTTAT 1401
Query 1380 AGTTTTGTAAGGATAGCtt 1398
|||||||| || |||||||
Sbjct 1402 AGTTTTGTGAGTATAGCTT 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5