BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482996
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39725.1 | Symbols: | LYR family of Fe/S cluster biogenesis... 725 0.0
> AT2G39725.1 | Symbols: | LYR family of Fe/S cluster biogenesis
protein | chr2:16569469-16570549 FORWARD LENGTH=602
Length=602
Score = 725 bits (392), Expect = 0.0
Identities = 531/594 (89%), Gaps = 25/594 (4%)
Strand=Plus/Plus
Query 1 GCTCTTTCGATTTTTGAGATATTTACAGGTACGCTTAAtctt--ctt-----cttcttct 53
|||||||||||||| ||||||||||||||||||||| | || ||| | ||||||
Sbjct 20 GCTCTTTCGATTTTGGAGATATTTACAGGTACGCTTGCTTTTCCCTTCACAACATCTTCT 79
Query 54 tcttcCTGCAT-CTCTG-TTCTAAAAT-CTTCCATCCGA-AAGGAAAATGGGAGCTTCCA 109
||||||||| | ||||| ||| ||| | | ||| || || |||||||||||||| |
Sbjct 80 TCTTCCTGC-TCCTCTGTTTC-AAATTCCGAAAATCAGATAA--AAAATGGGAGCTTCGA 135
Query 110 AACTTTCTGGGATGCAAAAGCAAGTCTTGAGTCTCTACAGAGGATTTCTAAGAGCAGCTC 169
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 AACTTTCCGGGATGCAAAAGCAAGTCTTGAGTCTCTACAGAGGATTTCTAAGAGCAGCTC 195
Query 170 GTTCTAGGCCAACAGAAGACAGGAAGAGAATAGAGATGATCGTGTCAACAGAATTCCGCC 229
|||| || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 196 GTTCAAGACCAATAGAAGACAGGAAGAGAATAGAGATGATTGTGTCAACAGAGTTCCGCC 255
Query 230 ACAACTCTAAGGAGGTTGACCGTAAGAATTTCCAGTACATCGAGTATTTGCTTCGCTTAG 289
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 256 ACAACTCTAAGGAGGTCGACCGTAAGAATTTTCAGTACATCGAGTATTTGCTTCGGTTAG 315
Query 290 GCACTAAACAACTCGATCAACTCAAAAGCCCCGACATAGTTAGCCTCTCCTCGATCAAGG 349
| |||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 316 GTACTAAACAGCTTGATCAACTCAAAAGCCCTGCCATAGTTAGCCTCTCCTCGATCAAGG 375
Query 350 TTGTTACATCTAAAACCTGATACTTTATTTTATAGCTTGTTGCTCTAGTGATCATAGATA 409
| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 376 TCGTTACATCTAAAACCTGATACCTTATTTTATAGCTTGTTGCTCTAGTGACCATAGATA 435
Query 410 ACAAAGA-GAGGAAATTGATTCGTTTTCCTCAAATTCTTACGTTGAGTTATGTATGTATG 468
|||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 436 ACAAAGCTGAGGAAATTGATTCGTTTTCCTCT--TT-TTACATTGAGTTATGTATGTATG 492
Query 469 ATGATGGATGTTTAAGAGCCAGCCATTATAAA-TAAAGAGAATTGTGATCACAATTGGA- 526
|||||||||||| ||| | | | |||||||| |||||||||||||||||||||||| |
Sbjct 493 ATGATGGATGTTCAAG-GTC--C-ATTATAAAATAAAGAGAATTGTGATCACAATTGAAT 548
Query 527 ATATATATACACATTCACACAATTATGTGCATCTACTAATAGTCTAGAGACTGC 580
|||||||||||| ||||||||||||||||||||| ||||||||||||||| |||
Sbjct 549 ATATATATACACTTTCACACAATTATGTGCATCTGCTAATAGTCTAGAGATTGC 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5