BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483007

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39782.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   686    0.0  


> AT2G39782.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G39010.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr2:16594037-16594516 REVERSE LENGTH=480
Length=480

 Score =  686 bits (371),  Expect = 0.0
 Identities = 430/459 (94%), Gaps = 2/459 (0%)
 Strand=Plus/Plus

Query  12   ACAAAAAAGGAGACTGATTCGTGAAGGGAAGAGAAAGATTGATCATCACGTAGAAACAAA  71
            ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct  18   ACAAAAAAGGAGACTGATTCGCGAAGGGAAGAGAAAGATTGATCATCACATAGAAACAAA  77

Query  72   GTTAATCGTGAAAATATTACGTGCATACACAATCGATGACAAAAATCTTTTGCAACATCC  131
            | |||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct  78   GCTAATCGTGAAGATATTACGTGCATGCACAACCGATGACCAAAATCTTTTGCAACATCC  137

Query  132  TAACTACTATAAAGTTATTGCATGGACAGACCCCGGAGATCCATACACAACACAGGTATG  191
             |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct  138  AAACTACTATAAAGTTATTGCATGGACAGACCCTGTAGAACCATACACAACACAGGTATG  197

Query  192  GGTTTCCAAAGGCAACTATTGGAAGTATAATACAGAATTGGTGATTCCTTTAGATTTTCC  251
            ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct  198  GGTTTCCAAAGGCAACTATTGGAAGTATAATACAGAATTGGCGATTCCCTTAGATTCTCC  257

Query  252  TGCAAAATATCTTTACCTAGAATTGTTTAGAAAATACTCTTGTAGAGATCCTGCAACATC  311
            |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct  258  TGCAAAATATCTTTACCTAGAATTGTTTAGAAAACATTCTTCTAGAGATCCTGCAACATC  317

Query  312  AGATGGAGATGTTGCCATAGGTCGGGCTAAGATTCGATTGCCGACGGATG-ACAAGTTCT  370
            ||||||||| |||||||||||||||||||||||||||||||| | ||||| | |||||||
Sbjct  318  AGATGGAGAAGTTGCCATAGGTCGGGCTAAGATTCGATTGCCAAAGGATGGA-AAGTTCT  376

Query  371  CTGGTGCAGCCCGTCTCGTCGATTTTAACAGTGATCGATGTATCGTGGATAGAGGAACTC  430
            |||||||||| |||||||| ||||| ||||||||||| ||||||||||||| ||||||||
Sbjct  377  CTGGTGCAGCTCGTCTCGTTGATTTGAACAGTGATCGTTGTATCGTGGATAAAGGAACTC  436

Query  431  TAGAATTGTCTTTGGAACTAATTCATACGGTTGTAGTAA  469
            | ||||||||||||||||||||||||||| |||||||||
Sbjct  437  TTGAATTGTCTTTGGAACTAATTCATACGATTGTAGTAA  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5