BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483019
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39850.1 | Symbols: | Subtilisin-like serine endopeptidase ... 3783 0.0
> AT2G39850.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr2:16630473-16634253 FORWARD LENGTH=2634
Length=2634
Score = 3783 bits (2048), Expect = 0.0
Identities = 2281/2392 (95%), Gaps = 21/2392 (1%)
Strand=Plus/Plus
Query 1 AAGATTGTTCTAGTGAGTGAGTGGGGGATGGCAATAGCTTTTCATACCTTCCTTCTTCAA 60
||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 127 AAGATTGTTCTGGTGAGTGAGTGAGGGATGGCTATAGCTTTTCATACCTTTCTTCTTCAA 186
Query 61 CTGCTACTCTTCTTCTTTGCTTCTTTTGCGGAAGCAAATGACACGCGAAAGACATACCTT 120
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 187 CTGCTACTCTTCTTCTTTGCTTCTTTTGCGGAAGCAAACGACTCGCGAAAGACATACCTT 246
Query 121 GTGCAGATAAAAGTTGG-AGAGCATCCATATGGGTCAAGTTCCGGTCACCAGGAACTACT 179
|||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 247 GTGCAGATGAAAGTTGGTGGA-CATCGATATGGGTCAAGTTCCGGTCACCAGGAACTACT 305
Query 180 CGGCGAAGTTCTTGACGACGATAGCACCGTAGCGGATGCATTTATCTACAGCTATAAGGA 239
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 306 AGGCGAAGTTCTTGACGACGATAGCACCTTAGCGGATGCATTTATCTACAGCTATAAGGA 365
Query 240 GAGCTTCACCGGTTTCTCGGCAAGTCTCACACAAAGTGAACGGCAAAAGCTGATGAGGAG 299
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 366 GAGCTTCACCGGTTTCTCGGCAAGTCTCACACCAAGAGAACGGCAAAAGCTGATGAGGAG 425
Query 300 GAGAGAAGTATTGGAAGTGTCACGTAGCAGAAACCTAAAGCTTCAAACGACAAGATCATG 359
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AAGAGAAGTATTGGAAGTTTCACGTAGCAGAAACCTAAAGCTTCAAACGACAAGATCATG 485
Query 360 GGACTTCATGAATCTAACATTAAAAGCTGAGCGCAATCTCGAGAATGAGAGTGATTTGGT 419
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 486 GGACTTCATGAATCTAACATTAAAAGCTGAGCGAAATCCCGAGAATGAGAGTGATTTGGT 545
Query 420 GGTGGCTGTCATCGATTCCGGCATTTGGCCTTACTCTGAGCTCTTCGGTAGCGATAGCCC 479
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 546 TGTGGCTGTCATCGATTCCGGCATTTGGCCCTACTCTGAGCTCTTCGGTAGCGATAGCCC 605
Query 480 TCCTCCTCTTGGTTGGGAAAACAAATGCGAAAACATAACTTGCAACAACAAGATCGTTGG 539
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TCCCCCTCCTGGTTGGGAAAACAAATGCGAAAACATAACTTGCAACAACAAGATCGTTGG 665
Query 540 GGCTCGATCATACTACCCGAATAAAGAAAAGTACAAGTGGGTTGAAGAGAAATCGGTGAT 599
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 666 GGCTAGATCATACTACCCGAAAAAAGAAAAGTACAAGTGGGTTGAAGAGAAATCGGTGAT 725
Query 600 TGACGTGACGGGACACGGCACACACGTGGCCTCCATTGTTGCCGGCAGGAAAGTAGAGAA 659
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 726 TGACGTGACGGGACACGGCACACACGTAGCCTCCATTGTTGCTGGCAGGAAAGTAGAGAA 785
Query 660 GGCGGGCTACTTTGGGCTAGCGGAAGGCACGATGAGAGGCGGTGTTCCCAACGCAAAGAT 719
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 786 GGCGGGGTACTTTGGGTTAGCGGAAGGCACGATGAGAGGCGGTGTTCCCAACGCGAAGAT 845
Query 720 CGCCGTTTATAAAACATGTTGGAGAGTAATAAGAAAAGATGGTAGAGAGGATTCAGTTTG 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 846 CGCCGTTTATAAAACATGTTGGAGAGTAATAAGAAAAAATGGTAGAGAGGATTCAGTTTG 905
Query 780 TCGAGAAGATAATATCTTGAAGGCAATAGATGATGCGATCGAGGACAAGGTTGACATCAT 839
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 906 TCGAGAAGATAATATCTTGAAGGCAATAGATGATGCGATCGCGGACAAGGTCGACATCAT 965
Query 840 ATCGTACTCTCAGGGGTTT-ATATCTA-G--GCTTCAAAAAGAAAAAGTCGCGTGGGCGT 895
||||| |||||||||||| | || || | || |||||||| |||||| | |||||||
Sbjct 966 CTCGTATTCTCAGGGGTTTCA-ATTTACGCCACTGCAAAAAGATAAAGTCTCTTGGGCGT 1024
Query 896 TCTTGAGAGCACTTAAGAATGGAATTTTGACTTCAGCCGCAGCCGGGAACTATGGGAAC- 954
|||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 1025 TCTTGAGAGCACTTAAGAATGGAATTTTGACTTCAGCCGCGGCAGGGAACTATGCGAACA 1084
Query 955 -T----A---TTATTACACTGTTGCCAATGGCGCACCTTGGGTCATGACCGTTGCAGCGA 1006
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 ATGGGAAGTTTTATTACACTGTTGCCAATGGCGCACCTTGGGTCATGACCGTTGCAGCGA 1144
Query 1007 GCTTGAAAGATAG-ATATTTAGAGACTAAGTTGGAGCTGGAAGGAGAAGATAAGCCAATT 1065
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1145 GCTTGAAAGATAGAATA-TTCGAGACTAAGTTGGAGCTGGAAGGAGAAGATAAGCCAATT 1203
Query 1066 ATTGTGTACGACACGATCAACACCTTTGAGACACAAGATTCTTTCTACCCACTTTGGGAT 1125
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||
Sbjct 1204 ATTGTGTACGACACGATCAACACCTTTGAGACTCAAGATTCTTTCTACCCGCTTTTGAAT 1263
Query 1126 GAAAAAGCATCCGCTGAATCAACAAGAAAACGTGAACTCATCGCTGAGAGCAACGGTTAC 1185
||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1264 GAAAAAGCACCCCCTGAATCAACAAGAAAACGTGAACTCATCGCTGAGAGAAACGGTTAC 1323
Query 1186 ACAATCTTGTCTAA--CT-ATGAGAAGGATGAAGGAAAAGATGTTTTCTTCGAATTCGCT 1242
|||| |||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1324 TCAATATTGTCTAATTATGATGAGAAGGACAAAGGAAAAGATGTTTTCTTCGAATTCGCT 1383
Query 1243 CAAATCAACCTCTTGGACAAAGCGATTAAAGAGAGAGAGAAAGGCGCAATCGTATTGGGA 1302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 CAAATCAACCTCTTGGACGAAGCGATTAAAGAGAGAGAGAAAGGCGCAATCGTATTGGGA 1443
Query 1303 GGTAGATCTTACGACTTCAATGAGTCGAAAAAGTTACAATTTCCTATCACTTCTATATTT 1362
|| | ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 1444 GGAAAATCTTACGACTTCAATGAGTCGATAAAGTTACAGTTTCCTATCGCTTCTATATTT 1503
Query 1363 TTGGACAAACAAAAGCAAGGTAAACTATGGGAGTACTATAAAAAAGATCAAAGCAAAGAA 1422
|||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1504 TTGGACGAACAAAAGAAAGGTAAACTATGGGACTACTATAAAAAAGATCAAAGCAAAGAA 1563
Query 1423 CGTTTAGCCAAAATTCACAAGACAGAGGAAATTCCACGAGAAGAGGGATGGGTTCCAACT 1482
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1564 CGTTTAGCCAAAATTCACAAGACCGAGGAGATTCCACGAGAAGAGGGATGGGTTCCAACT 1623
Query 1483 GTTGCTCACTTATCATCGAGGGGTCCTAATTGTGACAGTTTCCTAGCAAACATTCTCAAG 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GTTGCTCACTTATCATCGAGGGGTCCTAATTGTGACAGTTTCCTAGCAAACATTCTCAAG 1683
Query 1543 CCCGATATAGCTGCTCCGGGGTTGGACATCATAGCGGGTTGGCCCGAGAATGTGAAACTT 1602
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1684 CCCGATATAGCTGCTCCGGGGTTAGACATCATAGCGGGTTGGCCTGAGAATGTGAAACTA 1743
Query 1603 TCGTCAGACCGCCCCTCCAACGATTACCGCCATCTCAGATTCAACATAATGTCAGGAACT 1662
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TCGTCAGACCGCCCCGCCAACGATTACCGCCATCTCAGATTCAACATAATGTCAGGAACT 1803
Query 1663 TCCATGGCTTGCCCTCACGCCACTGGACTTGCCTTGTACCTCAAGTCGTTTAAACGTTGG 1722
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1804 TCCATGGCTTGCCCTCACGCCACTGGACTTGCCTTGTACCTCAAGTCGTTCAAACGTTGG 1863
Query 1723 TCTCCATCCGCTATTAAATCTGCCCTCATGACCACTTCCACGGAAATGACGGATGAGGGC 1782
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| | |
Sbjct 1864 TCTCCATCCGCTATTAAATCTGCCCTCATGACCACTTCCTCAGAAATGACAGATGACGAC 1923
Query 1783 TACGAGTTTGCATATGGGTCAGGTCACTTAAACGCTACAAAAGTCCGAGACCCGGGATTG 1842
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1924 AACGAGTTTGCATATGGGTCAGGTCACTTAAACGCTACAAAAGTCCGAGACCCGGGTTTG 1983
Query 1843 GTCTACGAAACACATTACCAAGACTACATAGATTACATGTGCAAACTAGGTTACAACACC 1902
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1984 GTCTACGAAACACATTACCAAGACTACATAGATTACTTGTGCAAACTAGGTTACAACACC 2043
Query 1903 GAGAAGCTAAGATCACACGTTGGAAGCGACAAGATAGATTGCTCCAAGACAGAGATAGAC 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 GAGAAGCTAAGATCACACGTTGGAAGCGACAAGATAGATTGCTCCAAGACAGAGATAGAC 2103
Query 1963 CACGACGCCGACCTCAACTATCCAACCATGACGGCTCGAGTCCCCCTGCCCCTGGACACC 2022
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2104 CACGACGCGGACCTCAACTATCCAACCATGACGGCTCGAGTACCCCTGCCCCTGGACACC 2163
Query 2023 CCATTCAAAAAAGTCTTCCATAGAACGGTCACAAACGTTAACGACGGAGAATTCACTTAC 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2164 CCATTCAAAAAAGTCTTCCATAGAACGGTCACAAACGTTAACGACGGAGAATTCACTTAC 2223
Query 2083 CTCGGAGAAATCAACTACCGAGGTGACAAGGACTTTGACGAGATCATTGTGGATCCTCCA 2142
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2224 CTCCGAGAAATCAACTACCGAGGTGACAAGGACTTTGACGAGATCATTGTGGATCCTCCA 2283
Query 2143 CAGCTAAAATTTAGCGAGTTGGGAGAGACCAAGACTTTCACGGTGACTGTCACCGGAATA 2202
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2284 CAGCTAAAATTTAGCGAGTTGGGAGAGACCAAGACTTTTACGGTGACTGTCACCGGAATA 2343
Query 2203 TCGAAGCGGAATTGGAAGAAGAACAAGGCGTTTATGACAAGGAACACGTGGCTCACGTGG 2262
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2344 TCGAAGCGGAATTGGAACAAGAACAGGGCGTTTATGACAAGGAACACGTGGCTCACGTGG 2403
Query 2263 ACGGAGAAAGACGGTTCCCGCCAAGTCAGGAGTCCGATTGTCATATACTCAATTAACGGA 2322
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 2404 ACGGAGAAAGATGGTTCCCGCCAAGTCAGGAGTCCCATTGTCATATACTCAATAAAAGGA 2463
Query 2323 CCCAAAGCTTGCATGTGAATTCCCCAAGAAGTCAAGAACTGAAGCTGCCACT 2374
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2464 CCAAAAGCTTGCATGTGAATTCCCCAAGAAGTCAAGAACTGAAGCTGCCACT 2515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118423085655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5