BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483020
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39851.1 | Symbols: | Proteinase inhibitor, propeptide | ch... 721 0.0
> AT2G39851.1 | Symbols: | Proteinase inhibitor, propeptide |
chr2:16634519-16635568 FORWARD LENGTH=579
Length=579
Score = 721 bits (390), Expect = 0.0
Identities = 519/578 (90%), Gaps = 21/578 (4%)
Strand=Plus/Plus
Query 1 AAATCACAATATAGATTATTCTATCCAAATCTCAAATCTTTAATCTCT---CAATATAAT 57
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 AAATCACAATATAGAATATTCTATCCAAATCTCAAATCTTTAATCTCTCAGCAATATAAT 62
Query 58 TCTTAGCA-ATTTTATTGAAATGATTTCCCAAATATTGTTGATTTTCTTAGCATTTTCAG 116
|||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 63 TCTTAG-AGATTTTATTGAAATGACTTCCCAAATATTGTTGATTTTCATAGCATTTTCAG 121
Query 117 TTTCCGTCGTATGTTCGAGTAGAGCGTTGGGGCCATCTCCGGACAATCCGCTAATGAAGG 176
||| ||||||||||||||||||| | ||||||||| |||||||||||| || |||||| |
Sbjct 122 TTTTCGTCGTATGTTCGAGTAGAACTTTGGGGCCAGCTCCGGACAATCAGCAAATGAA-G 180
Query 177 T-TTATCTCGTCCATGTTGATTTTGAATTGTATCATGGTGACTGTAAGCAATACCAACAA 235
| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TGTTATCTCGTCAATGTTGATTTTGCATTGTATCATGGTGACTGTAAGCAATACCAACAA 240
Query 236 CTTCTCAAAAAGGTGGTTCACGGAAGGTCACCAAAAGATGCTCTTATATATTGCTACAAG 295
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 241 CTTCTCAAAAAGGTGGTTCACGGAAGGTCAGCAAAAGATGCTCTTGTATATTGCTACAAG 300
Query 296 GAAGTCGTGAGCGGCTTTGCAGCAAAACTTACCGATGAAGAGGCTAAAAAATTAATTGGT 355
|||||| ||||||| |||||||||||||| |||| || ||||||| ||||||||| |||
Sbjct 301 GAAGTCATGAGCGGGTTTGCAGCAAAACTGACCGCTGCAGAGGCTGAAAAATTAAAGGGT 360
Query 356 GAAAAAGGGATTTATGGTGTAGATGAAGACGA-AGTATACTCCATGAACGTCGAACCCTA 414
|| |||||||||| || | |||||| |||| | | ||| ||||||| ||||||||||| |
Sbjct 361 GAGAAAGGGATTTCTGCTATAGATGTAGACCACA-TATTCTCCATGGACGTCGAACCCCA 419
Query 415 TAGCCATAGGTTGGCAAAGGATATTAATAACTAGTTACTTAATATTGTAAGGGTTTTT-C 473
||||||| || ||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 420 TAGCCAT-GG----CAAAGGATATTAACAACTAGTTGCTTAATATTGTAAGGGTTTTTTC 474
Query 474 TTTTGGTTCGGTAAATTACTCTTGTAAGGTTCACTTGAAAACTTGG------CTAAAAAC 527
|||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 475 TTTTTGTTCGGTAAATCACTCTTGTAAGGTTCACTTGAAAACTTGGAAAGAACTAATAAC 534
Query 528 AAAAGAGAGGATGATTTGAACTGAAATATATTAAATAA 565
|||||| ||||||||||||| ||||||||||||| |||
Sbjct 535 AAAAGAAAGGATGATTTGAAATGAAATATATTAACTAA 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5