BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483023
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1439 0.0
> AT2G39870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G55690.1);
Has 73 Blast hits to 71 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16643381-16645377
FORWARD LENGTH=1736
Length=1736
Score = 1439 bits (779), Expect = 0.0
Identities = 1130/1288 (88%), Gaps = 70/1288 (5%)
Strand=Plus/Plus
Query 1 tttttttCTTTTGG-TTTCCAATGCAAAATAGTTAAGAAAAGACCAAAGGAAAATAGTTT 59
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 31 TTTTTTTC-TTTGGATTTCCAAGGCAAAATAGTTAAGAAAAGACCAAAGGAAAATAGTTT 89
Query 60 TGATTTTCGTCCATCACGCATTAATTACGGAT-A--ATTATATT---AA-G--------a 104
|||||||||||||||||||||||||||||||| | |||||||| || | |
Sbjct 90 TGATTTTCGTCCATCACGCATTAATTACGGATAATTATTATATTAAGAAGGAAAAAAAAA 149
Query 105 aa-aaaaaaaaGCAGAAGTGATATTAAAGTGCTTTTGAGCTGTCTCATAGAAAGTAGAAA 163
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 150 AACAAAAAAAAGCAGAAGTGATATTAAAGTGCTTTTGAGCTGTCTC-------GTAGAAA 202
Query 164 CCATGAAACCTTAAT--AA--AA----G----CAACATTCTCCATCTTCCTCCTCACTTA 211
||||||||||||||| || || | ||||||||||||||||||||||||||||
Sbjct 203 CCATGAAACCTTAATAAAAGCAACCTTGTCTTCAACATTCTCCATCTTCCTCCTCACTTA 262
Query 212 AT-CCTTAGTTCACACTTCAAAACCActctctctccctctcctctgcttcatcttcttct 270
|| || ||||||||||||||| ||||||| | | || | ||| || | |||||||||
Sbjct 263 ATCCCCAAGTTCACACTTCAAATCCACTCT-T-T--CTAT-TTCT-CTCCTTCTTCTTCT 316
Query 271 atgtctcacctccttcctcctcctccttatctctccGTCAACCATCCTATCATGGAGAAA 330
||||||| ||||| | | |||||| | ||||||||||||||| ||||| ||||||||||
Sbjct 317 ATGTCTCGCCTCC-T-C-CCTCCT-C--ATCTCTCCGTCAACCTTCCTACCATGGAGAAA 370
Query 331 ACTCCTTCTTCCGAGCTAACCCCAACTCGACTCGGTTTCCCTAACGAGTTTCCTTACGAG 390
||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 371 ACTACTTCTTCCGAGTTAACCCCAACTCGACTCGGTTTTCCTAACGAGTTCCCTTACGAG 430
Query 391 TTCGACTCTCCTTCCTTCTCCCCTGGTTTCACTTCTCCCGGTGACTCCACCGAGACGGAA 450
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 431 TTCGACTCTCCTTCCTTCTCCCCTGGTTTCACTTCTCCCGGTGACTCCACTGAGACGGAA 490
Query 451 GACGAAAGCAGTGACGACGAGGAAGACTTCCTCGCTGGGTTAACTCGCCGACTCGCTCCC 510
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GACGAAAGCAGTGATGACGAGGAAGACTTCCTCGCTGGGTTAACTCGCCGACTCGCTCCT 550
Query 511 TCGACTCAGCGTctccctcctcctcctcctctcTACAAGACTGAGGAGAAACGTCAAGTG 570
|||||||||||||| |||| ||| ||||||| |||| |||||||||||||||||||
Sbjct 551 TCGACTCAGCGTCT---TCCT--TCC-CCTCTCTTCAAGTCTGAGGAGAAACGTCAAGTT 604
Query 571 GCAGCTACTTCACCACAGTCAACACTGAGTGGACTCGGAAGCTTTTCAAACTCAGGAAGT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GCAGCTACTTCACCACAGTCAACACTGAGTGGACTCGGAAGCTTTTCAAACTCAGGAAGT 664
Query 631 AGAAGCCCTATC-TTACCATCCCCACCGGCTCCTACGTCTTC-TTTCCGTAGAGACAATG 688
|||||||||||| || ||||| ||||||||||||||||| || |||| |||||||||| |
Sbjct 665 AGAAGCCCTATCCTT-CCATCTCCACCGGCTCCTACGTCATCATTTC-GTAGAGACAACG 722
Query 689 CTTGGGATGTGATATCTGCAGCTGCTGGAGAAGTAGCTAGACTCAAACTTGGAAGCTACG 748
| ||||||||||| ||||| |||||||||||||| |||||||| || || ||||||||||
Sbjct 723 CGTGGGATGTGATTTCTGCGGCTGCTGGAGAAGTCGCTAGACTTAAGCTCGGAAGCTACG 782
Query 749 AGCCTCATCATCTTCCACTTCAGACCCCTGAGTCTCTTCTACGCCGTCAAAACGCGGCGT 808
|||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 783 AGCCTCATCACCTTCCCCTTCAAACCCCTGAGTCTCTTCTCCGCCGTCAAAACGCTGCCA 842
Query 809 TTCATGCTGAACTCCAACAGCAGCGTCTCATCGAACAGATGTGGCTCTGTTCTTCTCAGT 868
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 843 TACATGCTGAACTCCAACACCAGCGTCTCATCGAACAGATGTGGCTCTGCTCTGCTCAGT 902
Query 869 CAAGAATAAAGCTTTCGGAGAATCATCA-CCCGAGGAGAGTTA-TGAACGACGAAGT-TG 925
||||| | ||||| || ||||||| | | ||| |||||||| | | || || |||| |
Sbjct 903 CAAGATTCAAGCTCTCAGAGAATCGT-ATCCCAAGGAGAGT-AGTTAATGAAGAAGGCT- 959
Query 926 TGTTTGAGAATCCGAGATACGTGAGACACAACAATCCTACATGGTTGTCGACGCAACACG 985
| ||||||||||||||||||||||||| |||||||||||| |||||| | ||||||| |
Sbjct 960 TATTTGAGAATCCGAGATACGTGAGACGCAACAATCCTACGTGGTTGCCTCCGCAACAAG 1019
Query 986 CCGTTGCTCCCCTT-AAACGTCCTTCTGCCGGTACCGGAGTTTTCCTTCCCCGGCGATAC 1044
||| ||||| || |||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 1020 CCGCAGCTCCT-TTGAAACGTCCTTCTGCTGGAACCGGTGTTTTTCTTCCCCGGCGATAC 1078
Query 1045 CCAACAACC-CCTCCTTCCGATTCTCTGAAAAAACCAGTCAACCCTCCAGCTATGTTGCA 1103
||| | || || ||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 1079 CCATCGGCCGCC-CCTTCCGATTCCCTGAAAACACCAGTCAACACTCCAGCTATGTTGCA 1137
Query 1104 ATCTAAAGTGAATCAACAAAATCTCAACTTTGATGAGTTCACCAATGTTGTTGGTCCAAG 1163
|||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1138 GCCTAAAGTGAAACCTCAAAATCTCAACTTTGATGAGTTCACCAATATTGTTGGGCCAAG 1197
Query 1164 GCGTAGTCAGTTCGATTACGAGTGCATGCTAGCCAGAAGTTCACTACTAGCTCGTCAGGG 1223
|||||| || |||||||||||||||||| | || |||||| || |||| |||||||||||
Sbjct 1198 GCGTAGCCAATTCGATTACGAGTGCATGTTGGCGAGAAGTACAGTACTTGCTCGTCAGGG 1257
Query 1224 AAATTTCAGATCAGTTAGTGGTGGTGGT 1251
|||||||||| |||||||||||||||||
Sbjct 1258 AAATTTCAGAGCAGTTAGTGGTGGTGGT 1285
Score = 298 bits (161), Expect = 1e-79
Identities = 195/210 (93%), Gaps = 7/210 (3%)
Strand=Plus/Plus
Query 1337 TATG-ATTTTTAGTCACTAAGACAAAGCTCTCTGTAAtttttttGTTGACCTT-GGAGGG 1394
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1515 TATGTATTTTTAGTTACTAAGACCAAGCTCTCTGTAATTTTTTTGTTGACCTTGGGAGGG 1574
Query 1395 --TTTAAGGGAGTGGAGTGGGGAAATTGAAAATGTGTTGGGTGGGATTTGTTATTTGTGT 1452
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1575 TTTTTAA-GGAGTGGAGTGGGGAAATTGAAAATTTGTTGGGTGGGATTTGTTATTTGTGA 1633
Query 1453 TACTTAAATAGTGTTTTCTGCTATTTTTGATAATATCTAATGGGGT-TGTAATAAAAACA 1511
||| ||||||||||||||||||||||||| ||| ||||||| |||| |||| ||||||||
Sbjct 1634 TACATAAATAGTGTTTTCTGCTATTTTTGGTAAAATCTAAT-GGGTCTGTAGTAAAAACA 1692
Query 1512 TCGGAATTATTTTGTTTGTTTATTAATAAT 1541
||||||||||||||||||||||||||||||
Sbjct 1693 TCGGAATTATTTTGTTTGTTTATTAATAAT 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76053825675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5