BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483024
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1 |... 2551 0.0
AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3 |... 1751 0.0
AT3G55740.1 | Symbols: PROT2, ATPROT2 | proline transporter 2 |... 1153 0.0
AT1G41890.1 | Symbols: | pseudogene, proline transporter 2, si... 213 5e-54
AT1G42090.1 | Symbols: | pseudogene, similar to betaine/prolin... 115 1e-24
> AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1
| chr2:16655679-16658331 FORWARD LENGTH=1801
Length=1801
Score = 2551 bits (1381), Expect = 0.0
Identities = 1580/1669 (95%), Gaps = 41/1669 (2%)
Strand=Plus/Plus
Query 91 TTGCGAATCGAGCTGGATTCTTGGGCTC-CTTTTTCTTTCAATCAAAAGCGAAGCTTTTT 149
|||||||||||||||||||||||||||| ||||||||||||||| || ||| ||
Sbjct 145 TTGCGAATCGAGCTGGATTCTTGGGCTCGCTTTTTCTTTCAATC--AA---AAG----TT 195
Query 150 TCGTTATTAGTGAAGGAGaaaaattcgctaaaaaaagagaa-tttttttg-taaaaaaat 207
||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 196 TCGATATTAGTGAAGGA-TAAAATTCGCTAAAAAAAGAGAATTTTTTTTGTTAAAAAAAT 254
Query 208 tataaaaGCTGGCTTTCTCAAAATTTCTTCATGTGGT------------Cgaag-a-a-g 252
|||||||||||||||||||||||||||| |||||||| ||||| | | |
Sbjct 255 TATAAAAGCTGGCTTTCTCAAAATTTCTCCATGTGGTCGACGAAGAAGACGAAGAAGACG 314
Query 253 aagaagaaagagaaagTCTCTTAGCAACCATGACCGCCACCGAAGCTAAGAATCGCAAAA 312
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 315 AAGAAGAAAGAGAAAGTCTCTTAGCAAACATGACCGCCACCGAAGCTAAGAATCGCAAAA 374
Query 313 TCAATGTCGGAGATGGAGATGATGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAA 372
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 375 TCAATGTCGGAGATGGAGATGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAA 434
Query 373 TTAGCAGCGATTCATGGTTTCAGGTGGCGTTTGTTTTGACCACCGGTATAAACAGCGCGT 432
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 435 TTAGCAGCGATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT 494
Query 433 ATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGGTGGTGTGGTTG 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGGTGGTGTGGTTG 554
Query 493 GTCTTATTCTTGCTACTGCAATCTCTCTTTATGCAAACACTCTCATAGCTAAGCTTCATG 552
||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 555 GTCTTCTTATTGCTACTGCAATCTCTCTTTATGCAAACACTCTAATAGCTAAGCTTCATG 614
Query 553 AGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGGTAGAA 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 615 AGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGGTAGGA 674
Query 613 AGGCTTATCATCTTACATGGGGATTGCAATATGTCAATCTTTTCATGATTAATTGTGGAT 672
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 675 AGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCATGATTAATTGTGGAT 734
Query 673 TCATCATCCTAGCTGGTTCCGCCTTGAAGGCTGTTTATGTGCTTTTCAGGGATGATCATA 732
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 735 TCATTATCCTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCTTTTCAGGGATGATCATA 794
Query 733 CCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTAATTTGTGCGATTTTCGCGATTG 792
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 795 CCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTTGTGCGATTTTCGCTATTG 854
Query 793 GGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTGCAGTTTCGACCTTCCTCAGTCTCA 852
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 855 GGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTGGAGTTTCGACCTTCCTCAGTCTCA 914
Query 853 TCTATATCGTTGTGGCAATTGTGCTATCTGTTAGAGATGGAGTAAAAACACCTTCAAGAG 912
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 915 TCTATATTGTTGTGGCAATCGTGCTATCGGTTAGAGATGGAGTAAAAACACCTTCAAGAG 974
Query 913 ATTACGAGATACAAGGATCATCATTAAGCAAACTTTTTACCATCACAGGAGCAGCCGCAA 972
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 975 ATTACGAGATACAAGGATCATCATTGAGCAAACTTTTTACCATCACAGGAGCAGCCGCAA 1034
Query 973 ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAATTCAGGCAACAGTGAGGCAAC 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAATTCAGGCAACAGTGAGGCAAC 1094
Query 1033 CAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATTCACAGCGGGTGTTCTACCGA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1095 CAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATTCACAGCGGGTGTTTTACCGA 1154
Query 1093 TGTATGCAGTTACATTCATCGGATATTGGGCTTACGGATCCTCAACCTCGACCTATCTAC 1152
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1155 TGTACGCAGTTACATTCATCGGATATTGGGCTTATGGATCCTCAACCTCGACCTATCTAC 1214
Query 1153 TAAACAGCGTCAATGGCCCACTCTGGGTCAAAGCCCTTGCAAACATCTCCGCTATCCTTC 1212
||||||| || ||||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 1215 TAAACAGTGTTAATGGCCCACTCTGGGTCAAAGCCCTTGCTAACGTCTCTGCTATCCTTC 1274
Query 1213 AATCTGTTATCTCTTTACACATATTTGCGAGTCCAACATATGAGTACATGGACACAAAGT 1272
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 AATCTGTTATCTCTTTGCACATATTTGCGAGTCCAACATATGAGTACATGGACACAAAGT 1334
Query 1273 TTGGGATCAAAGGAAACCCATTTGCGATAAAGAACTTGTTGTTTAGGATCATGGCGAGAG 1332
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1335 ATGGGATCAAAGGAAACCCATTTGCGATAAAGAACCTGCTGTTTAGGATCATGGCGAGAG 1394
Query 1333 GAGGGTACATAGCGGTTAGCACGCTTATTTCAGCGCTCTTGCCGTTCCTTGGTGACTTCA 1392
| |||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1395 GCGGGTACATAGCGGTAAGCACGCTTATCTCAGCGCTGTTGCCGTTCCTCGGTGACTTCA 1454
Query 1393 TGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTTTAGCCAACCACATGT 1452
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1455 TGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTCTAGCCAACCACATGT 1514
Query 1453 ACTATAAGGCAAAGAACAATAAGCTCAATGCTATGCAAAAGCTATGGCATTGGCTTAACG 1512
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1515 ACTATAAGGCAAAGAACAATAAGCTGAATGCTATGCAAAAGCTATGGCATTGGCTTAACG 1574
Query 1513 TGGTCTTCTTCAGTTTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCG 1572
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 TTGTCTTCTTTAGTTTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCG 1634
Query 1573 TTGATTCGAAAAACTTCCATGTTTTTGCAGATTTGTAATTCATTATAT-ATATAGTCAAT 1631
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1635 TTGATTCCAAAAATTTCCATGTTTTTGCAGATTTGTAATTCATTATATTATATAGTCAAT 1694
Query 1632 TGTAT-T--TTTATTCTTAGGCAGGTTTATATCTCCTACCATAAGCTTGTATtctctctc 1688
||| | | ||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1695 TGTGTATCCTTTATTCTTAGGCAGGTTTATTTCTCCTG---TAAGCTTGTATTCTCTCTC 1751
Query 1689 tctctctctcCGTCTTACCATTAGAGCCTAAATAAATAAATAAAGTTCT 1737
| | | | |||||||||||||||||||||||||||||| |||||||
Sbjct 1752 TAT-T-T----GTCTTACCATTAGAGCCTAAATAAATAAATCAAGTTCT 1794
> AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3
| chr2:15343006-15345337 REVERSE LENGTH=1597
Length=1597
Score = 1751 bits (948), Expect = 0.0
Identities = 1224/1356 (90%), Gaps = 24/1356 (2%)
Strand=Plus/Plus
Query 298 CTAAGAATCGCA-AAATCAATGTCGGAGATGGAGATGATGTTGTTGATATCGAAATCCCT 356
|||||||||||| ||| ||||||| | | ||| | | | |||||||||||||||||||
Sbjct 178 CTAAGAATCGCATAAA-CAATGTC-G-G--GGA-A-G--G-TGTTGATATCGAAATCCCT 227
Query 357 GACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCGTTTGTTTTGACCACC 416
|||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||| ||
Sbjct 228 GACACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACA 287
Query 417 GGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGG 476
||||||||||||| || ||||||||||||||||||||| | |||||||||||||| |||
Sbjct 288 AGTATAAACAGCGCATACGTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGG 347
Query 477 ATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCTCTTTATGCAAACACTCTC 536
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 348 ATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTC 407
Query 537 ATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGA 596
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 408 GTAGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGCTATAGAGACCTTGCGGGA 467
Query 597 TTCATTTACGGTAGAAAGGCTTATCATCTTACATGGG-GATTGCAATATGTCAATCTTTT 655
|||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 468 TTCATTTACGGTAGAAAGGCTTATTGTCTTACATGGGTG-TTGCAATATGTCAATCTTTT 526
Query 656 CATGATTAATTGTGGATTCATCATCCTAGCTGGTTCCGCCTTGAAGGCTGTTTATGTGCT 715
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 527 CATGATTAATTGTGGTTTCATCATACTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCT 586
Query 716 TTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTAATTTG 775
||| |||||||||||| ||||||| |||||||||||||||| ||||| ||| | |||||
Sbjct 587 TTTTAGGGATGATCATGCCATGAAGTTACCTCATTTTATAGCTATTGCGGGTCTGATTTG 646
Query 776 TGCGATTTTCGCGATTGGGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTGCAGTTTC 835
|||| |||| || ||||| ||||||||||| |||||||||||| | |||||||| |||||
Sbjct 647 TGCGGTTTTTGCTATTGGAATTCCTCATTTGTCGGCTCTTGGGATATGGCTTGCGGTTTC 706
Query 836 GACCT-TCCTCAGTCTCATCTATATCGTTGTGGCAATTGTGCTATCTGTTAGAGATGGAG 894
||| | ||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 707 GAC-TATCCTCAGCCTCATCTATATCGTTGTGGCAATCGTGCTATCGGTTAAAGATGGAG 765
Query 895 TAAAAACACCTTCAAGAGATTACGAGATACAAGGATCATCATTAAGCAAACTTTTTACCA 954
| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 766 TTAAAGCACCTTCAAGAGATTACGAGATACAAGGATCACCACTAAGCAAACTTTTTACCA 825
Query 955 TCACAGGAGCAGCCGCAA-ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAATT 1013
|||| ||||||||||| | | || ||||||| ||||||||| ||||||||||||||||||
Sbjct 826 TCACTGGAGCAGCCGCTACA-CTAGTTTTCGTATTCAACACAGGGATGCTTCCAGAAATT 884
Query 1014 CAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATTC 1073
||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 885 CAGGCAACAGTAAAGCAACCAGTAGTAAAAAACATGATGAAGGCTCTATACTTTCAATTC 944
Query 1074 ACAGCGGGTGTTCTACCGATGTATGCAGTTACATTCATCGGATATTGGGCTTACGGATCC 1133
|| | ||||||| ||||||||| ||| ||| ||||||||| ||||||||||||||||||
Sbjct 945 ACGGTGGGTGTTTTACCGATGTTTGCGGTTGTATTCATCGGGTATTGGGCTTACGGATCC 1004
Query 1134 TCAACCTCGACCTATCTACTAAACAGCGTCAATGGCCCACTCTGGGTCAAAGCCCTTGCA 1193
|| |||||| ||||||||||||||| ||| ||||| ||||| ||||| |||||||||||
Sbjct 1005 TCGACCTCGCCCTATCTACTAAACAACGTTAATGGTCCACTTTGGGTTAAAGCCCTTGCT 1064
Query 1194 AACATCTCCGCTATCCTTCAATCTGTTATCTCTTTACACATATTTGCGAGTCCAACATAT 1253
||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct 1065 AACATCTCCGCTATCCTTCAATCCGTTATCTCGTTGCACATTTTTGCAAGTCCAACATAT 1124
Query 1254 GAGTACATGGACACAAAGTTTGGGATCAAAGGAAACCCATTTGCGAT-AAAGAACTTGTT 1312
|||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1125 GAGTACATGGACACCAAGTTTGGGATCAAAGGAAACCCATTGGC-ATTAAAGAACTTGTT 1183
Query 1313 GTTTAGGATCATGGCGAGAGGAGGGTACATAGCGGTTAGCACGCTTATTTCAGCGCTCTT 1372
||||||||||||||| ||||| ||||||||||| ||||| |||||| | ||||| |||||
Sbjct 1184 GTTTAGGATCATGGCAAGAGGCGGGTACATAGCAGTTAGTACGCTTCTCTCAGCACTCTT 1243
Query 1373 GCCGTTCCTTGGTGACTTCATGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATT 1432
|||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1244 GCCGTTCCTTGGGGACTTCATGAGCCTCACTGGTGCAGTGAGCACATTCCCCCTTACATT 1303
Query 1433 CATTTTAGCCAACCACATGTACTATAAGGCAAAGAACAATAAGCTCAATGCTATGCAAAA 1492
|||| ||||||||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 1304 CATTCTAGCCAACCACATGTACTATAAGGCTAAGAACAATAAGCTCAATACTTTGCAAAA 1363
Query 1493 GCTATGGCATTGGCTTAACGTGGTCTTCTTCAGTTTGATGTCTGTTGCTGCAGCCATTGC 1552
|||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1364 GCTATGCCATTGGCTCAACGTTGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGC 1423
Query 1553 AGCTGTCAGACTCATCGCCGTTGATTCGAAAAACTTCCATGTTTTTGCAGATTTGTAATT 1612
|||| | || ||||||||| |||| || ||||||||||| ||||||||||||||||||||
Sbjct 1424 AGCTCTTAGGCTCATCGCCCTTGACTCCAAAAACTTCCACGTTTTTGCAGATTTGTAATT 1483
Query 1613 CATTATATATATAGTCAATTGTATTTTTATTCTTAG 1648
||| | ||||||| ||| | |||||| ||||||||
Sbjct 1484 CAT-A-ATATATACTCA-TCGTATTT--ATTCTTAG 1514
> AT3G55740.1 | Symbols: PROT2, ATPROT2 | proline transporter 2
| chr3:20695499-20698265 FORWARD LENGTH=1715
Length=1715
Score = 1153 bits (624), Expect = 0.0
Identities = 1065/1278 (83%), Gaps = 30/1278 (2%)
Strand=Plus/Plus
Query 342 GATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCG 401
||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 339 GATCTCGAAGTCCCTGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCT 398
Query 402 TTTGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATG 461
|||||| | || |||||||||||||| || ||||||||||||||||| || ||| | |||
Sbjct 399 TTTGTTCTAACGACCGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATG 458
Query 462 GTTCCTTTAGGTTGGATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCTCTT 521
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 459 GTTCCTTTGGGTTGGATTGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCAATCTCTCTT 518
Query 522 TATGCAAACACTCTCATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTAT 581
|| ||||||||||| || || || ||||||||||||||||||| |||||||||||| |||
Sbjct 519 TACGCAAACACTCTTATCGCCAAACTTCATGAGTTTGGTGGCAAAAGACACATTCGTTAT 578
Query 582 AGAGACCTTGCTGGATTCATTTACGGTAGAAAGGCT-TATCATCTTACATGGGGATTGCA 640
||||| ||||| || ||||| || |||| ||| | | |||| | ||||||||||||||||
Sbjct 579 AGAGATCTTGCAGGCTTCATCTATGGTA-AAAAGATGTATCGTGTTACATGGGGATTGCA 637
Query 641 ATATGTCAATCTTTTCATGATTAATTGTGGATTCATCATCCTAGCTGGTTCCGCCTTGAA 700
|||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 638 ATATGTCAATCTTTTCATGATTAATTGTGGCTTCATCATACTTGCTGGTTCAGCCTTAAA 697
Query 701 GGCTGTTTATGTGCTTTTCAGGGATGATCA-TAC-CATGAAACTACCTCATTTTATAGCC 758
|||||||||||| ||||| || |||||| | | | ||||||||| ||||| || || |||
Sbjct 698 GGCTGTTTATGTACTTTTTAGAGATGAT-AGT-CTCATGAAACTGCCTCACTTCATCGCC 755
Query 759 ATTGCTGGT-TTAATTTGTGCGATTTTCGCGATTGGGATTCCTCATTTATCGGCTCTTGG 817
|| || ||| || | || ||||||||||| || || |||||||||||||| ||||||||
Sbjct 756 ATCGCGGGTGTTG-TATGCGCGATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGG 814
Query 818 GGTCTGGCTTGCAGTTTCGACCTTCCTCAGTC-TCATCTATATCGTTGTGGCAATTGTGC 876
||||||| | |||||| || ||||||| | | ||||| || |||| ||||| || |
Sbjct 815 AATCTGGCTAGGAGTTTCAACAATCCTCAG-CATAATCTACATTATTGTTGCAATAGTTC 873
Query 877 TATCTGTTAGAGATGGAGTAAA-AACACCTTCAAGAGATTACGAGATACAAGGATCATCA 935
|||| | || |||||||||||| || ||| |||||||||| | |||||||||||||||
Sbjct 874 TATCAGCTAAAGATGGAGTAAACAAG-CCTGAAAGAGATTACAACATACAAGGATCATCA 932
Query 936 TTAAGCAAACTTTTTACCATCACAGGAGCAGCCGCAAATCTGGTTTTCGCATTCAACACC 995
||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 933 ATAAACAAACTCTTTACCATAACAGGAGCAGCTGCAAATCTAGTTTTCGCATTCAACAC- 991
Query 996 GGGA-TGCTTCCAGAAATTCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAA 1054
|||| |||| || ||||| ||||| || |||| |||||| || |||||||||||||||||
Sbjct 992 GGGAATGCTCCCGGAAATACAGGCCACGGTGAAGCAACCGGTCGTTAAAAACATGATGAA 1051
Query 1055 GGCTCTATACTTTCAATTCACAGCGGGTGTTCTACCGATGTATGCAGTTACATTCATCGG 1114
|||||| || ||||||||||| | |||||| |||| ||||| || ||||||||||||||
Sbjct 1052 GGCTCTGTATTTTCAATTCACTGTTGGTGTTTTACCTATGTACGCGGTTACATTCATCGG 1111
Query 1115 ATATTGGGCTTACGGATCCTCAACCTCGACCTATCTACT-AAACAGCGTCAATGGCCCAC 1173
||||||||||||||| ||||| || ||||| ||||| || ||||||||||| ||| ||
Sbjct 1112 ATATTGGGCTTACGGGTCCTCGACATCGACTTATCT-CTTAAACAGCGTCAGTGGACCTG 1170
Query 1174 TCTGGGTCAAAGCCCTTGCAAACATCTCCGCTATCCTTCAATCTGTTATCTCTTTACACA 1233
| ||||||||||| || || ||||| || ||| | || |||||||||||||||||||| |
Sbjct 1171 TTTGGGTCAAAGCACTCGCTAACATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATA 1230
Query 1234 TATTTGCGAGTCCAACATATGAGTACATGGACACAAAGTTTGG-GATCAAAGGAAACCCA 1292
| ||||| ||||| || |||||||| ||||||||||||| ||| | ||||||||| |||
Sbjct 1231 TTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGGAG-TCAAAGGAAGTCCA 1289
Query 1293 TTTGCGATAAAGAA-CTTGTTGTTTAGGATCA-TGGCGAGAGGAGGGTACATAGCGGTTA 1350
|| || || ||||| || ||||||||| | || | || |||||| | ||||| ||||| |
Sbjct 1290 TTGGCAATGAAGAATCT-GTTGTTTAGAA-CAGTAGCAAGAGGAAGCTACATTGCGGTGA 1347
Query 1351 GCACGCTTATTTCAGCGCTCTTGCCGTTCCTTGGTGACTTCATGAGCCTAACTGGTGC-A 1409
|||| ||| | || ||||| || ||||| || || || ||||||||||| || || || |
Sbjct 1348 GCACTCTTCTCTCTGCGCTTTTACCGTTTCTCGGAGATTTCATGAGCCTTACCGGAGCGA 1407
Query 1410 GTGAGCACATTCCCTCTCACATTCATTTTAGCCAACCACATGTA-CTATAAGGCAAAGAA 1468
| ||||| ||||||||||||||||| ||||| || |||||||| || | || | |||
Sbjct 1408 -TAAGCACGTTCCCTCTCACATTCATATTAGCGAATCACATGTATCT-TGTTGCTATGAA 1465
Query 1469 CAATAAGCTCAATGCTA-TGCAAAAGCTATGGCATTGGCTTAACGTG-GTCTTCTTCAGT 1526
|| |||| | | || |||||||||||||||||||||| || || | |||||| |
Sbjct 1466 TGATGAGCTTAGT-CTTGTGCAAAAGCTATGGCATTGGCTCAATGTTTG-CTTCTTTGGA 1523
Query 1527 TTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCGTTGATTCGAAAAAC 1586
|| |||||| ||||||| || ||||| ||||| ||||||||| | ||||| || || |||
Sbjct 1524 TTAATGTCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGACTCCAAGAAC 1583
Query 1587 TTCCATGTTTTTGCAGAT 1604
|||||||||||||| |||
Sbjct 1584 TTCCATGTTTTTGCTGAT 1601
> AT1G41890.1 | Symbols: | pseudogene, proline transporter 2,
similar to GB:CAA65053 from (Arabidopsis thaliana); blastp match
of 57% identity and 6.6e-110 P-value to GP|7415521|dbj|BAA93437.1||AB022783
amino acid permease {Oryza sativa} | chr1:15652635-15656463
REVERSE LENGTH=3829
Length=3829
Score = 213 bits (115), Expect = 5e-54
Identities = 186/221 (84%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 1011 ATTCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAA 1070
||| |||| ||||||| |||||| || ||||||||||||||||| ||||| || |||||
Sbjct 2880 ATT-AGGCGACAGTGAAGCAACCGGTCGTTAAAAACATGATGAAAGCTCTGTATTTTCAG 2938
Query 1071 TTCACAGCGGGTGTTCTACCGATGTATGCAGTTACATTCATCGGATATTGGGCTTACGGA 1130
||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2939 TTCACTGTTGGTGTTTTACCGATGTATGCGGTTACATTCATCGGATATTGGGCTTACGGG 2998
Query 1131 TCCTCAACCTCGACCTATCTACTAAACAGCGTCAATGGCCCACTCTGGGTCAAAGCCCTT 1190
||||| || ||||| ||||| | || ||||||| ||| || || ||||||||||| ||
Sbjct 2999 TCCTCGACATCGACTTATCTGTTTAATAGCGTCAGTGGACCTCTTTGGGTCAAAGCACTC 3058
Query 1191 GCAAACATCTCCGCTATCCTTCAATCTGTTATCTCTTTACA 1231
|| || || || ||| | || ||||||||||||||||||||
Sbjct 3059 GCTAATATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACA 3099
> AT1G42090.1 | Symbols: | pseudogene, similar to betaine/proline
transporter, similar to proline transporter 1 GI:1769901
from (Arabidopsis thaliana); blastp match of 62% identity and
2.4e-33 P-value to GP|21069016|dbj|BAB93108.1||AB075902 betaine/proline
transporter {Avicennia marina} | chr1:15720083-15720696
REVERSE LENGTH=614
Length=614
Score = 115 bits (62), Expect = 1e-24
Identities = 94/109 (86%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 589 TTGCTGGATTCATTTACGGTAGAAAGGCT-TATCATCTTACATGGGGATTGCAATATGTC 647
||||| |||| ||| | |||| ||| | | |||| | |||||||||||||||||||||||
Sbjct 380 TTGCTTGATTGATTCA-GGTA-AAAAGATGTATCGTGTTACATGGGGATTGCAATATGTC 437
Query 648 AATCTTTTCATGATTAATTGTGGATTCATCATCCTAGCTGGTTCCGCCT 696
|||||||| ||||||||||||| ||||||||| || |||||||| ||||
Sbjct 438 AATCTTTTTATGATTAATTGTGCATTCATCATACTTGCTGGTTCGGCCT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893132495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5