BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483027
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39900.1 | Symbols: WLIM2a | GATA type zinc finger transcrip... 1336 0.0
AT3G55770.7 | Symbols: WLIM2b | GATA type zinc finger transcrip... 180 2e-44
> AT2G39900.1 | Symbols: WLIM2a | GATA type zinc finger transcription
factor family protein | chr2:16658656-16660437 FORWARD
LENGTH=1003
Length=1003
Score = 1336 bits (723), Expect = 0.0
Identities = 825/872 (95%), Gaps = 15/872 (2%)
Strand=Plus/Plus
Query 59 TCAGCTCCAATTTCAACCTGCATTTCTCTCTTCTCAATTTTGGTTTTC-CTTTTTGATTT 117
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 90 TCAGCTCCAATTTCAACCTGCATTTCTCTCTTCTCAATTTTGGGTTTCTTTTTTTGATAT 149
Query 118 CTCATTTGATCAGATCGACGAAGAGAGAAAG-AGGTTTTGAGCTGAGAGATCTTTGGAGG 176
||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 150 CTCATTTGATCAGATCGACGAAGAGAGGAAGAAGG-TTTGAGCTGAGAGATCTTTGGAGG 208
Query 177 T----AGAAGATCTCCAAAACGATGTCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTG 232
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 TAGAAAGAAGATCTCAAAAACGATGTCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTG 268
Query 233 CGAGAAGACAGTGTACCCTGTGGAGCTTCTCTCAGCTGATGGAATCTCTTATCACAAGTC 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 269 CGAGAAGACAGTGTACCCTGTGGAGCTTCTCTCAGCTGATGGAATCTCTTATCACAAGGC 328
Query 293 TTGCTTCAAATGCTCTCACTGCAAAAGCAGACTTCAACTGAGCAATTATTCATCAATGGA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TTGCTTCAAATGCTCTCACTGCAAAAGCAGACTTCAACTGAGCAATTATTCATCAATGGA 388
Query 353 AGGAGTGGTGTATTGTAGGCCTCATTTTGAGCAGCTCTTCAAGGAGTCTGGTAGTTTCAG 412
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 389 AGGAGTGGTGTATTGTAGGCCTCATTTTGAGCAGCTTTTCAAGGAGTCTGGTAGTTTCAG 448
Query 413 CAAGAACTTTCAGTCACCTGCAAAACCATTGACTGATAAGCCAACCCCTGAGCTGACTAG 472
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||
Sbjct 449 CAAGAACTTTCAGTCACCTGCAAAGCCATTGACTGATAAGCCAACCCCGGAGCTGAATAG 508
Query 473 GACACCTAGTCGAGTTGCTGGTATGTTCTCTGGAACGCAAGACAAATGCGCTACTTGCAG 532
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GACACCTAGTCGACTTGCTGGTATGTTCTCTGGAACGCAAGACAAATGCGCTACTTGCAC 568
Query 533 TAAAACCGTGTATCCTATCGAAAAGGTAACTGTGGAAAGCCAGTGTTACCATAAATCTTG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TAAAACCGTGTATCCTATCGAAAAGGTAACTGTGGAAAGCCAGTGTTACCATAAATCTTG 628
Query 593 CTTCAAGTGTTCTCATGGAGGCTGTCCGATATCTCCATCGAACTATGCAGCTCTTGAAGG 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 629 CTTCAAGTGTTCTCATGGAGGCTGTCCGATATCTCCATCGAACTATGCAGCTCTAGAGGG 688
Query 653 AATTTTGTACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAGAAAGGAAGTTACAATCA 712
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 AATATTGTACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAGAAAGGAAGTTACAATCA 748
Query 713 TCTCATCAAATCTGCTTCCATCAAACGCGCTACTGCTGCTGCTACCGCAGCTGCTGCAGC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TCTCATCAAATCTGCTTCCATCAAACGCGCTACTGCTGCTGCTACCGCAGCTGCTGCAGC 808
Query 773 TGTAGCAGCCGTTCCCGAATCTTGATTTTAAAATCTGTTTGTCTCTGTGTCTGTGATGTG 832
||||||||||||||||||||||||| || ||| ||| ||| | | ||||| |||| ||||
Sbjct 809 TGTAGCAGCCGTTCCCGAATCTTGAATTCAAATTCTCTTTATTTTTGTGTATGTGCTGTG 868
Query 833 TTGTTTACCTGTATTCGCT-TC-TTCATGTTCTTTGTCTTC--T--TCCAT--AGGCATA 884
|||||||| |||||||| | | |||||||||||||||||| | | | |||||||
Sbjct 869 TTGTTTACATGTATTCGATATGATTCATGTTCTTTGTCTTCCATAATTGAACCAGGCATA 928
Query 885 AAATTCTCCGAGTTTTCTTTGAGTTTCTTGTT 916
||||||||| |||||||| |||||||||||||
Sbjct 929 AAATTCTCCCAGTTTTCTCTGAGTTTCTTGTT 960
> AT3G55770.7 | Symbols: WLIM2b | GATA type zinc finger transcription
factor family protein | chr3:20703222-20705206 FORWARD
LENGTH=1082
Length=1082
Score = 180 bits (97), Expect = 2e-44
Identities = 193/240 (80%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 558 GTAACTGTGGAAAGCCAGTGTTACCATAAATCTTGCTTCAAGTGTTCTCATGGAGGCTGT 617
||||| || || |||||| || || || || ||||||||||| || |||||||| ||
Sbjct 752 GTAACAGTCGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGTTGC 811
Query 618 CCGATATCTCCATCGAACTATGCAGCTCTTGAAGGAATTTTGTACTGCAAGCACCATTTC 677
|| || || || || ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 812 CCAATTTCACCTTCCAACTACGCAGCTCTTGAAGGAATCCTGTACTGCAAGCACCATTTC 871
Query 678 GCTCAGCTTTTCAAGGAGAAAGGAAGTTACAATCATCTCA-TCAAATCTGCTTCCATCAA 736
|||||||| ||||||||||| ||||||||||| || || | ||||||| |||||||||||
Sbjct 872 GCTCAGCTCTTCAAGGAGAAGGGAAGTTACAACCA-CTTAATCAAATCCGCTTCCATCAA 930
Query 737 ACGCGCTACTGCTGCTGCTAC-CGCAGCTGCTGCAGCTGTAGCAGCCGTTCCCGAATCTT 795
|||| || | || || || | ||| || | || | | | ||| ||||||| |||||||
Sbjct 931 ACGCTCTGCAGCCGCAGC-AGTCGCCGCCGGTGTACCAGCAGCCTCCGTTCCTGAATCTT 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5