BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483028
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39910.1 | Symbols: | ARM repeat superfamily protein | chr2... 2278 0.0
AT2G39920.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 52.8 9e-06
> AT2G39910.1 | Symbols: | ARM repeat superfamily protein | chr2:16660596-16663048
FORWARD LENGTH=1481
Length=1481
Score = 2278 bits (1233), Expect = 0.0
Identities = 1320/1363 (97%), Gaps = 2/1363 (0%)
Strand=Plus/Plus
Query 1 GTAAAGAT-TCGAACTTAACAAAAGAAAATTGTCAATTTCGAAAAATGTTGAGCACAAAC 59
|||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTAAAGATAT-GAACTTTACAAAAGAAAATTGTCAATTTCGAAAAATGTTGAGCACAAGC 59
Query 60 TCTGACCTCCATGGTCGTCTTCTCCGATTATCAGAACCAATAGCAGAGATTCTTAGACGC 119
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTGATCTTCATGGCCGTCTTCTCCGATTATCAGAACCAATAGCAGAGATTCTTAGACGT 119
Query 120 ACACAGTACACACCGCAAGAAAGCAGCAAAGTATCCACTAAAGATATACTCTTTTCCTTG 179
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 120 ACACAGTACACACCGCAAGAGAGCAGCAAAGTATCCACCAAAGATATACTCTTGTCCTTG 179
Query 180 TTACCAAACACTTCGTCTTCTCGCCTTACCAATGAAGAATCGATCAAAAGTCTCGCGCTT 239
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 180 TTACCAAACACTTCGTCTTCTCGTCTCGCCAATGAAGAATCGATCAAAAGTCTCGCGCTT 239
Query 240 GCTTGTGCCCTTCTCGCTTCTTCACGTTCCTCCACTCACGAACTCCTCTCATGGATTCCA 299
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 240 GCTTGTGCCCTTCTCGCTTCTTCACGTTCATCCACTCACGAACTTCTCTCATGGATTCCA 299
Query 300 GAAAACCTCTCTGTTATGGGGGAATCTACATTTTGGGAGATTTCAAGGGATTGTTTCAGT 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAAACCTCTCTGTCATGGGGGAATCTACATTTTGGGAGATTTCAAGGGATTGTTTCAGT 359
Query 360 GATTTTTCCAGCAACAGTACTGCTGAGAAGCTCGTGGAATTGGTGGAGGATAGTGAGAAG 419
|||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct 360 GATTTTTCTAGCAACAGTAATGCTGAGAAGCTTGTGGAATTGGTAGAGGATAGTGAGAAG 419
Query 420 ATGGAAATGTTACCGATTGTTTTGCCGGAGTTAAAAGATGGAATCGAAAAGAGTTCACTT 479
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATCGAAATGTTGCCGATAGTTTTGCCGGAGTTAAAAGATGGAATCGAAAAGAGTTCACTT 479
Query 480 GGTAAAGGCAGTGATGAAGAGGATGTTTCAGCTGCAATGGCGAGAACTCCTGTTGGTTAT 539
|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 480 GGTAAAGGCAGTGATGCAGAGGATGTTTCAGCTGCAATGGCTAGAACACCTGTTGGTTAT 539
Query 540 GCGATACTTGCTGCTCACCAGCTCAGGTGGTTTGTTACTCAGGTTGAGAAACCGAATTTG 599
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 540 GCTATACTTGCTGCTCACCAGCTCAGGTGGTTTGTTACTCAGGTTAAAAAACCGAATTTG 599
Query 600 GTGAAATTTTGTAACTTGGTGGTTCCTTGTGCTTTGACAGCACTTGATCATTGGTCTCCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGAAATTTTGTAACTTGGTGGTTCCTTGTGCTTTGACAGCACTTGATCATTGGTCTCCT 659
Query 660 GAAGTCAAAGGGCAGGGTATGATAACCTTTGTTCATCTTGCTAAAAATGTGAGTTCGGGT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 GAAGTCAAAGGGCAGGGTATGATAACCTTTGTTCATCTTGCTAAAAATGTGAGTTCCGGT 719
Query 720 GATCTTGGTTTGTATGGAGATGTGGTTCTTGATGCGTGTTGCCAGAATATAGCTTCCGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATCTTGGTTTGTATGGAGATGTGGTTCTTGATGCGTGTTGCCAGAATATAGCTTCCGAT 779
Query 780 GATGAGATTTGGATACATGTGGTAGAGTTATCTGTGCTTCTTGTTACTAAAATCCACCCA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATGAGATTTGGATACATGTGGTAGAGTTATCTGTGCTTCTTGTTACTAAAATCCACCCA 839
Query 840 AATAATCCCCGAAGCCCGTGGTATGAGAAGATCATGAATGAGATGCTTGGGCATTTGGAA 899
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 AATAATCCTCGAAGCCCGTGGTATGAGAAGATCATGAATGAGATGCTCGGGCATTTGGAA 899
Query 900 CGCCAACCAAGAAATAAGGAGCGACGTATCACTTGGCTAAGATTCGTTGAGCCACTCTTG 959
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 CGCCAACCAAGAAATAAGGAGCGACGTATCACTTGGCTAAGATTTGTTGAGCCACTCTTG 959
Query 960 AACTCTCTAGGTCTTTTCTTACTTGCTCATTTTCGACGTATCTTCCCTCTTTTCTTTCAG 1019
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AACTCTCTAGGGCTTTTCTTACTTGCTCATTTTCGACGTATCTTCCCTCTTTTCTTTCAG 1019
Query 1020 TGGATGCATTCAGACGACGCCGAAACCGTTTTGTTGGTTCTTGAGAGACTGGAGACGGTT 1079
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 1020 TGGATGCATTCAGACGACGCCGAAACAGTTCTGTTGGTTCTTGAGAGACTGGAGACAGTT 1079
Query 1080 GTGAGGTTGACGTGGATTAGAAACTCACCTGTGATCCCAAGATTGGTGGATGAGCTTGTT 1139
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 GTGAGGTTGACGTGGATTAGACACTCACCTGTGTTCCCAAGATTGGTGGATGAGCTTGTT 1139
Query 1140 TCCTTGTACAAAGAGTCATCGATGCGTAAGAATCGCGATGATATTAGACCTCTTATCCTC 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 TCCTTGTACAAAGAGTCATCGATGCGTAAGGATCGCGATGATATTAGACCTCTTATCCTC 1199
Query 1200 CGTATCTTGATGCTACTCCGCCAGTGCAAAGGTCTACAGTTTGAGTCAGCGTGGAGTCAA 1259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 CGTATCTTGATGCTACTCCGCCAGTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAA 1259
Query 1260 TACCAGGAGGATCCAAATCTGAGTACTGTCAGTCAACATATATGGACTAGTTCAAGTTGA 1319
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1260 TACCAGGAGGATCCAAATCTGAGTACTGTTAGTCAACATATATGGACTAGTTCAAGTTGA 1319
Query 1320 TCTCAAGAGCGTATGTTTGACTAAAACAGCCAtttttttttCT 1362
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCTCAAGAGCGTATGTTTGACTAAAACAGCCATTTTTTTTTCT 1362
Score = 139 bits (75), Expect = 7e-32
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1363 TGATGCAAGTAATCACTGGCTAATCCTCGAATTTTTGTAAGAATTTGGCTCTTGACTCTT 1422
||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1394 TGATGCAAGTAATTACTGGCGAATCCTCGAATTTTTGTAAGCATTTGGCTCTTGACTCTT 1453
Query 1423 CTTAAGCTAATCTGATTTGATACA 1446
||||||||||||||||||||||||
Sbjct 1454 CTTAAGCTAATCTGATTTGATACA 1477
> AT2G39920.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr2:16663017-16664539 REVERSE LENGTH=1171
Length=1171
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1419 TCTTCTTAAGCTAATCTGATTTGATACA 1446
||||||||||||||||||||||||||||
Sbjct 1171 TCTTCTTAAGCTAATCTGATTTGATACA 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5