BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483029
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39920.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 1544 0.0
> AT2G39920.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr2:16663017-16664539 REVERSE LENGTH=1171
Length=1171
Score = 1544 bits (836), Expect = 0.0
Identities = 923/965 (96%), Gaps = 6/965 (1%)
Strand=Plus/Plus
Query 1 TTGGGGAGTCGATATTCGATGGAATCTGGATGTTACATGACATCTTTAGCAGCTTCCATC 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 202 TTGGGGAGTCGGTATTCGATAGAATCTGGATGTTACATGACATCTTTAGCAGCTTCCATC 261
Query 61 TTCATAGCGTCTCTAGTAACATTTGGAGTTTTGATGATAACACTTCTTATAGCTTTATCA 120
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 262 TTCATAGCTTCTCTAGTAACATTTGGAGTTTTGATGATAACACTTCTTATTGCTTTATCA 321
Query 121 ACCATGTTACAAACCTGTGAAAACCGGAATATTGGAATAGTCGAGGCTCAAAGACTTGAT 180
||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||| |||
Sbjct 322 ACCATGTTACAAAGCTGTGAGAACCGGAATATTGCAATCGTCGAGGCTCAAAGACTCGAT 381
Query 181 GAAAGTTTCGGTTACTGTAAAATCTTGTCTATACACTCGCAGCTCAATAGCTTGGGA-GA 239
|| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||
Sbjct 382 GAGAGTTTCGGTTACTGTAAAATCTTGTCTTTACACTCTCAGCTCAATAGCTT-GGATGA 440
Query 240 AGAAAGTGAGTTACCATTGTTATGTAGAGATGTTGCTTTACGCAGAATCAAACAAGGAAT 299
||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 441 AGAAAGTGAATTACCACTGTTATGTAGAGATGTTGCTTTACACAGAATCAAACAAGGAAT 500
Query 300 TTACTTGAGAGAGTTAAACTTCACTATTCAAATGGCTCTCACTTATTTTCAAACCGTCAA 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 501 TTACTTGAGAGAGTTAAACTTCACTATTCAAATGGCTCTCACTTATTTCCAAACCATCAA 560
Query 360 ACCGATGAATGATAACCT-CGATGTTGTTGTGATCGATATTGATGACACCAATCTATTTG 418
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 561 ACCGATGAATGATAAC-TGCGATGTTGTTGTGATCGATATTGATGACACCAATCTATTAG 619
Query 419 AACAAGATAGTTATTACATGAAGTATATTGAAGAAGCAAAGCATCAGAAAAGCATACTAA 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AACAAGATAGTTACTACATGAAGTATATTGAAGAAGCAAAGCATCAGAAAAGCATACTAA 679
Query 479 CACTTGAACTATATTCTAAGCTAAGATCACAAGGCTATTCAATGGTTCTGTTATCAAGAA 538
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 680 TACTTGCACTATATTCTAAGCTTAGATCACAAGGCTATTCAATGGTTCTATTATCAAGAA 739
Query 539 GACCCGAAACAGAGCGGAACGCCACAATCGAGCAGTTAAAATCTAGTGGATACAGCGATT 598
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 740 GACCCGAAACAGAGCGGAACGCCACAATCGAGCAGTTAAAATCTAGAGGATACAGCGACT 799
Query 599 GGTCACATTTGATCATGAGCAGGGAAGATACAAGACAAAAGGAAGAGTTAGAAAGAGGTC 658
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GGTCACATTTGATTATGAGCAGGGAAGATACAAGACAAAAGGAAGAGTTAGAAAGAGGTC 859
Query 659 ACCGCGTAATTGGATTCATTGGTAATCATATGGATGTGTTAAGAAGCCAGTGGAATTGGC 718
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 860 ACCGCGTAATTGGAGTCATTGGTAATCATATGGATGTGTTAAGAGGCCAGTGGAATTGGC 919
Query 719 AAAGCAAGCGTCTGTTCAAACTTCCAAGCCTTGCCTATGATGATGTTTTGGATTACAGTG 778
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 920 AAAGCAAGCGTCTGTTCAAACTTCCAAGCCTTACCTATGATGATGTTTTGGATTACAATG 979
Query 779 AAAGATGAAATCATGAAGTTTGATGTGTATAGGTTTTCAAGAGTTTTCTGTAA--TATAG 836
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 980 AAAGATGAGATCATGAAGTTTGATGTGTATAGGTTTTCAAGAGTTTTCTGTAAAATATAG 1039
Query 837 TTTTATATGTTCCAAAGATAAAGTAGAGACATATTGTAATTCTTCAATGTCTCATGTTGT 896
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1040 TTTTATATGTTCCAAAGATAAAGTAGAGACATTTTGTAATAGTTCAATGTCTCATGTTGT 1099
Query 897 CACTATCACATCACAAAGTGGGTGGTCATGTATCCAAGAGTATATGTATCAAATCAGATT 956
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1100 CACTATCACATCACACAGTGGGTGGTCATGTATCCAAGAGTATGTGTATCAAATCAGATT 1159
Query 957 AGCTT 961
|||||
Sbjct 1160 AGCTT 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5