BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483031
Length=2191
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein | ch... 3083 0.0
> AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein |
chr2:16672493-16675748 REVERSE LENGTH=2396
Length=2396
Score = 3083 bits (1669), Expect = 0.0
Identities = 1992/2138 (93%), Gaps = 61/2138 (3%)
Strand=Plus/Plus
Query 61 CTCACTCTCGTGTTTATGTGTGGATCTGCGACCTCGATTTCAATTCGAAGTCGTCGGTTT 120
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CTCACTCTGGTGGTTATGTGTGGATCTGCGACCTCGATTTCAATTCGAAGTCGTCGGTTT 199
Query 121 CTTCACTAAATCGAA----T-C-----TC--tt-tttttttC---------TTCTTCGAT 158
|||| |||||||||| | | || || |||||||| || ||||||
Sbjct 200 CTTCTCTAAATCGAATCTTTCCAGGATTCGTTTGTTTTTTTCTTTTGTTTTTTTTTCGAT 259
Query 159 CCGATGGAGGATCCTGATATCAAGAGGTGTAGATTGAGCTGCGTCGCGACGGTTGATGAC 218
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 260 CCGATGGAGGATCCTGATATCAAGAGGTGTAAATTGAGCTGCGTCGCGACGGTTGATGAT 319
Query 219 GTCATCGAGCAAGTCATGACGTATATAACCGACCCCAAAGATCGCGATTCGGCGTCTTTG 278
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 320 GTCATCGAGCAAGTCATGACCTATATAACTGACCCGAAAGATCGCGATTCGGCTTCTTTG 379
Query 279 GTGTGTCGGAGATGGTTCAAGATTGATTCCGAGACGAGAGAGCATGTGACTATGGCGCTT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GTGTGTCGGAGATGGTTCAAGATTGATTCCGAGACGAGAGAGCATGTGACTATGGCGCTT 439
Query 339 TGCTACACTGCGACGCCTGATCGTCTTAGCCGTCGATTTCCGAACTTGAGGTCGCTCAAG 398
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 440 TGCTACACTGCGACGCCTGATCGTCTTAGCCGTCGATTCCCGAACTTGAGGTCGCTCAAG 499
Query 399 CTTAAAGGCAAGCCTAGAGCAGCTATGTTTAATCTCATCCCGGAGAACTGGGGAGGATAT 458
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 500 CTTAAAGGCAAGCCTAGAGCAGCTATGTTTAATCTGATCCCTGAGAACTGGGGAGGTTAT 559
Query 459 GTTACTCCTTGGGTTACTGAGATTTCTAA-ATCGCTTAAGCAGCTCAAATCGGTTCACTT 517
||||||||||||||||||||||||||||| | | |||| ||||||||||||||| |||||
Sbjct 560 GTTACTCCTTGGGTTACTGAGATTTCTAACAAC-CTTAGGCAGCTCAAATCGGTGCACTT 618
Query 518 CCGACGGATGATTGTCAGTGACTTAGATCTGGATCGTTTAGCTAAAGCCAGAGCAGATGA 577
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 619 CCGACGGATGATTGTCAGTGACTTAGATCTAGATCGTTTAGCTAAAGCTAGAGCAGATGA 678
Query 578 TCTTGA-AGCTTTGAAGCTCGATAAGTGCTCTGGTTTCACTACTGATGGACTTTTGAGCA 636
|||||| | |||||||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct 679 TCTTGAGA-CTTTGAAGCTAGACAAGTGTTCTGGTTTTACTACTGATGGACTTTTGAGCA 737
Query 637 TCGTTACACACTGCAGGAAAATAAAAACGTTGTTAATGGAAGAGAGTTCTTTTATTGAAA 696
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 738 TCGTTACACACTGCAGGAAAATAAAAACTTTGTTAATGGAAGAGAGTTCTTTTAGTGAAA 797
Query 697 AGGATGGTAAGTGGCTTCATGAGCTTGCTCAGCACAACACATCTCTTGAGGTTTTAAACT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AGGATGGTAAGTGGCTTCATGAGCTTGCTCAGCACAACACATCTCTTGAGGTTTTAAACT 857
Query 757 TCTACATGACGGAGTTTGCCAAAATCAG-CGCCAAAGACTTGGAAACCATAGCTAGAAAT 815
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 858 TCTACATGACGGAGTTTGCCAAAATCAGTC-CCAAAGACTTGGAAACCATAGCTAGAAAT 916
Query 816 TGCCGCTCTCTGGTTTCTGTGAAGGTCGGTGACTTTGAGATTTTGGAACTAGTTGGGTTC 875
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TGCCGCTCTCTGGTATCTGTGAAGGTCGGTGACTTTGAGATTTTGGAACTAGTTGGGTTC 976
Query 876 TTTAAGGCCGCAGCTAATCTTGAAGAATTTTGTGGTGGCTCCCTGAATGAGGATATTGGA 935
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 977 TTTAAGGCTGCAGCTAATCTTGAAGAATTTTGTGGTGGCTCCTTGAATGAGGATATTGGA 1036
Query 936 ATGCCTGAGAAGTACATGAATCTGGTTTTCCCCCGAAAGCTATGCCGTCTAGGCCTCTCT 995
||||||||||||||||||||||||||||| |||||||| ||||| || || || ||||||
Sbjct 1037 ATGCCTGAGAAGTACATGAATCTGGTTTTTCCCCGAAAACTATGTCGGCTTGGTCTCTCT 1096
Query 996 TATATGGGACCTAATGAAATGCCAATACTATTTCCATTCGCGGCCCAGATCCGAAAGCTG 1055
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1097 TACATGGGACCTAATGAAATGCCAATACTATTTCCATTCGCGGCCCAAATCCGAAAGCTG 1156
Query 1056 GATTTGCTTTATGCATTGCTAGAAACTGAAGACCATTGTACGCTAATCCAAAAGTGTCCT 1115
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1157 GATTTGCTTTATGCATTGCTAGAAACTGAAGACCATTGTACGCTTATCCAAAAGTGTCCT 1216
Query 1116 AATTTGGAAGTTCTCGAGACAAGGAATGTAATTGGAGATAGGGGTCTAGAGGTTCTTGCA 1175
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1217 AATTTGGAAGTTCTCGAGACAAGGAATGTAATCGGAGATAGGGGTCTAGAGGTCCTTGCA 1276
Query 1176 CAGTACTGTAAGCAGTTGAAGCGGCTGAGGATTGAACGGGGTGCAGATGAACAAGGAATG 1235
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1277 CAGTACTGTAAGCAGTTGAAGCGGCTGAGGATTGAACGCGGTGCAGATGAACAAGGAATG 1336
Query 1236 GAGGACGAAGAAGGCTTAGTCTCACAAAGAGGATTAATCGCTTTGGCTCAGGGCTGCCAG 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GAGGACGAAGAAGGCTTAGTCTCACAAAGAGGATTAATCGCTTTGGCTCAGGGCTGCCAG 1396
Query 1296 CAGCTAGAATACATGGCGGTGTATGTCTCAGACATTACGAACGAATCTCTTGAAAGCATA 1355
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1397 GAGCTAGAATACATGGCGGTGTATGTCTCAGATATAACTAACGAATCTCTTGAAAGCATA 1456
Query 1356 GGCATATATCTGAAAAACCTCTGTGACTTCCGCCTTGTCTTACTCGACCGGGAAGAAAGG 1415
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 GGCACATATCTGAAAAACCTCTGTGACTTCCGCCTTGTCTTACTCGACCGGGAAGAAAGG 1516
Query 1416 ATTACAGATTTACCATTGGACAACGGAGTGCGATCCCTCTTGATTGGATGCAAGAAACTC 1475
||||||||| | ||| ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1517 ATTACAGATCTGCCACTGGACAACGGAGTCCGATCTCTTTTGATTGGATGCAAGAAACTC 1576
Query 1476 AGACGGTTTGCTTTCTATCTCAGACAAGGCGGCTTAACCGACTTGGGCTTAAGCTACATC 1535
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1577 AGACGATTTGCATTCTATCTGAGACAAGGCGGCTTAACCGACTTGGGCTTAAGCTACATC 1636
Query 1536 GGACAATACAGTCCAAATGTGAGATGGATGCTGCTGGGTTACGTAGGTGAATCGGATGAA 1595
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1637 GGACAGTACAGTCCAAACGTGAGATGGATGCTGCTGGGTTACGTAGGTGAATCAGATGAA 1696
Query 1596 GGTTTAATGGAATTCTCGAGAGGTTGTCCGAATCTACAGAAGCTAGAGATGAGAGGCTGT 1655
||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1697 GGTTTAATGGAATTCTCAAGAGGCTGTCCAAATCTACAGAAGCTAGAGATGAGAGGTTGT 1756
Query 1656 TGCTTCAGCGAGCGAGCAATCGCTGCAGCAGTTACAAAATTGCCTTCACTGAGATATTTG 1715
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1757 TGCTTCAGTGAGCGAGCAATCGCTGCAGCGGTTACAAAATTGCCTTCACTGAGATACTTG 1816
Query 1716 TGGGTACAAGGTTACAGAGCATCAATGACGGGACAAGATCTAATGCAGATGGCTAGACCG 1775
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1817 TGGGTACAAGGTTACAGAGCATCGATGACGGGACAAGATCTAATGCAGATGGCTAGACCG 1876
Query 1776 TACTGGAACATCGAGCTGATACCATCGAGAAAAGTACCGGAAGTGAATCAGCTAGGAGAG 1835
|||||||||||||||||||| ||||| |||| ||| |||||||||||||| | |||||||
Sbjct 1877 TACTGGAACATCGAGCTGATTCCATCAAGAAGAGTCCCGGAAGTGAATCAACAAGGAGAG 1936
Query 1836 ATAAGAGAGATGGAGCATCCGGCTCATATATTGGCTTACTACTCTCTGGCTGGTCAGAGA 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1937 ATAAGAGAGATGGAGCATCCGGCTCATATATTGGCTTACTACTCTCTGGCTGGCCAGAGA 1996
Query 1896 ACAGATTGTCCAACAACTGTTAGAGTCCTGAGGGAGCCAATATGAT-TGGACC-AAAAAA 1953
||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||
Sbjct 1997 ACAGATTGTCCAACAACTGTTAGAGTCCTGAAGGAGCCAATATGATATG-ACCCAAAAAA 2055
Query 1954 CAGGTTTGTATATAAAGATTTGTAGTGTCGAGTTTTGGGGTTTCTT-----TG-GTTCT- 2006
||||||||||||||||||||| |||| ||||||||||||||||| || || ||
Sbjct 2056 CAGGTTTGTATATAAAGATTTTTAGTCTCGAGTTTTGGGGTTTCCACAAACTGTGTACTA 2115
Query 2007 T--TA-TTT--TT--------GATTCATGTTGTATCGTCAGATGTTTTTGGGAGATTACA 2053
| || ||| || | |||||||||| ||||| ||||||||||||||||||||
Sbjct 2116 TACTACTTTGGTTCTTTTTTTGTTTCATGTTGTGTCGTC-GATGTTTTTGGGAGATTACA 2174
Query 2054 TAGAGTC--T-T-GTTTGT---ATGGTCATCACTTCTTTATTTTTCCACAGGGGTCTGTC 2106
||||||| | | |||||| |||||||| |||||||||||||||| |||||||||||
Sbjct 2175 TAGAGTCAGTCTTGTTTGTTGTATGGTCATTACTTCTTTATTTTTCCTCAGGGGTCTGTT 2234
Query 2107 TACTCTTC-TTTCTTTAATAAAACCCCAAAGATTTTGA 2143
|||| || |||||||||||||||||| ||||||||||
Sbjct 2235 TACT-TTAATTTCTTTAATAAAACCCCGAAGATTTTGA 2271
Score = 122 bits (66), Expect = 1e-26
Identities = 68/69 (99%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 1 TCCCACTTTCTTCTTCTTCCTCCCAATCCGCCTCTTCTTCCTACGCGTGTCTCCTTCTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 17 TCCCACTTTCTTCTTCTTCCTCCCAATCCGCCTCTTCTTCCTACGCGTGTCTTCTTCTCC 76
Query 61 CTCACTCTC 69
|||||||||
Sbjct 77 CTCACTCTC 85
Score = 80.5 bits (43), Expect = 6e-14
Identities = 51/54 (94%), Gaps = 3/54 (6%)
Strand=Plus/Plus
Query 2139 TTTGATTTGTGGTTGTGATTGTTTTGATAACATTAGTAAAATAG-CAAATAATA 2191
||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2339 TTT-ATTTGTGGTTGTGATTGTTTTGATAACATTAGTAAAA-AGGCAAATAATA 2390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108684179925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5