BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483035
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39970.1 | Symbols: | Mitochondrial substrate carrier famil... 2104 0.0
> AT2G39970.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr2:16683832-16686709 REVERSE LENGTH=1415
Length=1415
Score = 2104 bits (1139), Expect = 0.0
Identities = 1271/1334 (95%), Gaps = 11/1334 (1%)
Strand=Plus/Plus
Query 57 TCATTATTTGGGGAATGGAGAAGAAGCTCCTCTCCTACAGAC-TC--CATTAACATCAGC 113
||||||||||||||||||||||||||||||| |||||||||| | |||||||| || |
Sbjct 86 TCATTATTTGGGGAATGGAGAAGAAGCTCCTTTCCTACAGACGCCATCATTAACAACATC 145
Query 114 CTCTTAAGCTTCTGCGATTCTCTCCGTTCGTCGGAAGCTTTCACGACGATTTTTCAATCC 173
|||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 146 CTCTTAAGCTTCTGCGATTCTCTCCGTTTGTCGGAAGATTTCACGACGATTCTTCAATCC 205
Query 174 TTATCCGAACCGGAGAAATCATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGCG 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 206 TTATCCGAACCGGAGAAATCATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGTG 265
Query 234 GTGGGATCATTGCTCAGCTTCTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 GTGGGATCATTGCTCAGCTTCTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGA 325
Query 294 CGGAGCGGGATCTGAAAAGGGAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGG 353
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CGGAGCGGGATCTGAAGAGGGAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGG 385
Query 354 TTGTCAAACAAGAGGGATGGGAGAGATTATACGGTGGATTGGCACCGTCTCTCGCTGGAA 413
||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 386 TTGTCAAACAAGAAGGATGGGAGAGGTTATATGGTGGATTGGCGCCGTCTCTTGCTGGAA 445
Query 414 CGGCAGCATCACAGGGTGTGTACTACTACTTCTACCAGGTGTTTCGGAATCAAGCTGAAG 473
|||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 446 CGGCTGCATCACAGGGTGTGTACTACTACTTCTACCAAGTGTTTCGGAATCGAGCTGAAG 505
Query 474 CCACAGCTCTTGCACGGAAGAAGAAAGGGTTGGGTGACGGATCAGTTGGGATGTTTGCTT 533
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 506 CCACAGCTCTTGCACGGAAGAAGAAAGGTTTGGGTGACGGATCAGTTGGGATGTTTGCTT 565
Query 534 CACTTTTAGTGGCTGCCTTTGCTGGATCGGTTAATGTTCTTATGACGAATCCAATTTGGG 593
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 566 CACTTTTAGTGGCTGCCTTTGCCGGATCGGTTAATGTTCTTATGACGAATCCGATTTGGG 625
Query 594 TGATTGTTACTCGCATGCAGACCCACAGAAAAATGACAAAAGATCAAACTGCTGCCTCTG 653
|||||||||| || ||||||||||||||||||||||||||||||||||| || ||| | |
Sbjct 626 TGATTGTTACGCGTATGCAGACCCACAGAAAAATGACAAAAGATCAAACAGCGGCCCCCG 685
Query 654 AGTCACCTTCTTCTGATGCAGAAGCTCTGGTTGCAGTTGAGCCGCGTCCATATGGAACCT 713
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 686 AGTCACCTTCTTCTAATGCAGAAGCTCTGGTTGCTGTTGAGCCGCGTCCATATGGGACCT 745
Query 714 TCAATACGATTCAAGAGGTTTACGATGAAGCTGGAGTGACTGGCTTCTGGAAAGGTGTAA 773
| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 746 TTAATACGATTCGAGAGGTTTACGATGAAGCTGGAATAACTGGCTTCTGGAAAGGTGTAA 805
Query 774 TTCCAACATTGATCATGGTAAGTAATCCGTCAATGCAATTTATGTTGTATGAGACAATGT 833
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 806 TTCCAACATTGATCATGGTAAGTAATCCGTCAATGCAATTTATGTTGTACGAGACAATGC 865
Query 834 TAACCAAGCTGAAGAAAAAGCGTGCCTTGAAGGGTAGCAACAGCGTAACCGCTTTGGAGA 893
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 866 TAACCAAGCTGAAGAAAAAGCGTGCCTTGAAGGGTAGCAACAACGTTACCGCTTTGGAGA 925
Query 894 CATTTCTTCTTGGAGCTGTGGCTAAACTCGGAGCTACAGTCACAACTTATCCTCTCTTGG 953
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 926 CATTTCTTCTCGGAGCTGTGGCGAAACTCGGAGCTACAGTCACAACTTACCCTCTCTTGG 985
Query 954 TTGTAAAGTCGCGACTTCAAGCCAAACAGGTCACAACAGGGGACAAAAGACACCAGTACA 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 986 TTGTAAAGTCGCGACTTCAAGCCAAACAGGTCACAACAGGGGACAAAAGACAACAATACA 1045
Query 1014 AAGGAACATTGGACGCGATTCTGAAAATGATTCGATATGAAGGGCTTTACGGGTTTTACA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1046 AAGGAACATTGGACGCGATTCTGAAAATGATTCGATATGAAGGGCTTTACGGGTTTTATA 1105
Query 1074 AAGGGATGAGCACAAAGATTGTGCAGAGCGTTTTAGCAGCTGCGGTTCTGTTCATGATCA 1133
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1106 AAGGGATGAGCACAAAGATTGTGCAGAGCGTTTTAGCTGCTGCGGTTCTGTTCATGATCA 1165
Query 1134 AGGAAGAGCTTGTCAAGGGAGCTAAGCTGTTGCTCTCAAATGCAACCTCTAGCTAAGTCA 1193
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1166 AGGAAGAGCTTGTCAAGGGAGCTAAGCTGTTGCTCTCAAACGCTACCTCTAGCTAAGTCA 1225
Query 1194 AGTCCAAGCCTTCTTGAATGAACGCTAGTAtttttttAGAAATAAATAAAAATAGATTTA 1253
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 1226 AGTCCAAGCCTTCTTGAATGAACGCTAGTAGTT----AGAAATAAATAAAAATAGATTAA 1281
Query 1254 TATTTCCAATAGTTTTCTTGATTAATTATCACACTATTGGGATTGTCGTTCATTTCCTGA 1313
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1282 -ATTTCCAATAGTTTTCTTGATTAATTATTACACTATTGGGATTGTTGTTCATTTCCTGA 1340
Query 1314 TGATTGCAATTGATTATTGTATTTTCTGCAAGATTCTT-AGTA-TGAAAATCTCAATAAA 1371
||||||||||||||||||||| |||||||||||||||| |||| ||||| ||| ||||||
Sbjct 1341 TGATTGCAATTGATTATTGTAATTTCTGCAAGATTCTTTAGTAATGAAA-TCTGAATAAA 1399
Query 1372 GTTTGGCAGATTTC 1385
||||||||||||||
Sbjct 1400 GTTTGGCAGATTTC 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68222540655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5