BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483038
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39990.1 | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic transl... 1700 0.0
> AT2G39990.1 | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic translation
initiation factor 2 | chr2:16698092-16700012 REVERSE
LENGTH=1205
Length=1205
Score = 1700 bits (920), Expect = 0.0
Identities = 1106/1194 (93%), Gaps = 20/1194 (2%)
Strand=Plus/Plus
Query 1 TCCTCTAACGCTCACATCGGAAACCCTAAATCTCCA--CTCT-----CTTTTACCCGTTC 53
|||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct 10 TCCTCTGACGCTCACATCGGAAACCCTAAATCTCCACTCTCTCGCGCCTTTTACCCCTTC 69
Query 54 TCAGAATCTTAACCATGGCGGCGGCGAGCGAGCACACCGTCTTGCAATTCGTGGCTCCTT 113
||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||| |
Sbjct 70 TCAGAATCTTAACCATGGCGGCGACGAGCGAGCACACCATCTTGCAATTTGTGTCTCCGT 129
Query 114 CATCAACGGCGACGGCAACAACCTCTGTACTCACGGCGAGAATCCACCCTCTCGTTATCT 173
||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 130 CATCAACGGCGTCCGCTACAACCTCTGTACTCACGGCGAGGATCCACCCTCTCGTTATCT 189
Query 174 TTAACGTCTGTGATTGCTTCGTGAGGCGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 233
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 190 TTAACGTCTGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 249
Query 234 TCCTCGGATCTATCTTACCTGATGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 293
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 250 TCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 309
Query 294 ACAATGAATTTTCTGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 353
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 ACAATGAATCATCCGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 369
Query 354 CACATCTTAAGGTGAATCCCAAGGAAATTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 413
|||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 370 CACACCTTAAGGTGAATTCAAAGGAAACTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 429
Query 414 TTAATGGCGGTAGTGCGCTGATTCATGAGTTCTATGCTAGAGAAGTTA-CCAACCCAATT 472
|||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 430 TTAATGGCGGTAGTTCGCTGATTCATGATTTCTATGCTAGAGAAG-TACCCAACCCAATT 488
Query 473 CACCTAACTGTGGACACTGGCTTTACAAATGGTGAGGGTACCATAAAAGCTTTTGTCTCT 532
|||||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||||
Sbjct 489 CACCTAACTGTGGATACTGGGTTTACTAATGGTGAGGGTACTATCAAAGCTTTTGTCTCT 548
Query 533 TCAAACCTTTCACTTGGTGATCGACAACTTGCTGCACAATTTCAAGAGATTCCTGTTGAT 592
|||||||| ||||| |||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 549 TCAAACCTCTCACTCGGTGATCGACAACTCGTTGCACATTTTCAAGAGATTCCTGTTGAT 608
Query 593 CTCCGTATGGTTGATGCTGAGAGAGTCGGATTCAATGTCCTCAAGGCAACATCTGTTGAC 652
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 609 CTCCGCATGGTTGATGCTGAGAGAGTCGGATTCGATGTACTTAAGGCAACATCTGTTGAC 668
Query 653 AAACTCCCAAATGACTTGGAAGGAATGGAGCTAACAATGGAGAGACTGTTAACTTTAATT 712
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 669 AAACTCCCAAATGACTTGGAAGGAATGGAGTTAACAATGGAGAGGCTGTTAACTCTAATC 728
Query 713 AACGATGTCTACAAATATGTTGACAGCGTCGTGGAAGGTCAAACAGCTCCAGACAACAAC 772
|||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 729 AACGATGTCTACAAATATGTTGACAGTGTCGTGGGAGGTCAAATAGCTCCAGACAACAAC 788
Query 773 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAATTACCTCCTCAAGTCTTC 832
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 789 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTC 848
Query 833 GATGACCTTGTGAACGATAGCCTCCAGGACCAATTGCTTCTGTTGTACCTTTCAAGCATA 892
||| |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 849 GATAACCTCGTGAATGATAGTCTCCAGGACCAATTGCTTCTGTTGTACCTATCAAGCATA 908
Query 893 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTCTAATAA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 909 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAA 968
Query 953 GCTTTGAAACACAAGGCTTTGCTAAAAATGTGGAATGCTGCTTTTTTGGTTTC-AGTTTT 1011
|||| ||||||||||| ||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 969 GCTTGGAAACACAAGGTTTTGCTAAAAATGGGGAATGCTGCTTTTTTGGTTTCGAATTTT 1028
Query 1012 TCTGTTAACAAGTTTTATGTAAGAATCAGCCTCTTGATGTAGTGTTCCTAAATTGCAA-T 1070
|| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 1029 -CTTTTAACAAGTTT-ATGTAAGAATCAGCTTCTTGTTGTAGTGTTCCTAAATTGCAAGT 1086
Query 1071 TTATA-AAGAGACAAAA-GACTCAGTTTCGTGAGTTAAGGTCTTTAAATGAGTTCTTTTT 1128
||| | || |||||||| | ||| ||||||||| |||||||||||||| | | | ||||
Sbjct 1087 TTA-AGAA-AGACAAAATG-CTCTGTTTCGTGAATTAAGGTCTTTAAAAGGGAT-TTTT- 1141
Query 1129 AGTTGGTAAGTCTAATTTTAAACAAGATACATAAAAATGAGCTTTGTTCTTTTT 1182
||||||| | |||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1142 AGTTGGTGTGCCTAATTTTAAACAATATACATATAAATGAGCTTTGTTCTTTTT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5