BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483040
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40000.1 | Symbols: HSPRO2, ATHSPRO2 | ortholog of sugar bee... 2095 0.0
> AT2G40000.1 | Symbols: HSPRO2, ATHSPRO2 | ortholog of sugar beet
HS1 PRO-1 2 | chr2:16700510-16702028 REVERSE LENGTH=1519
Length=1519
Score = 2095 bits (1134), Expect = 0.0
Identities = 1354/1454 (93%), Gaps = 40/1454 (3%)
Strand=Plus/Plus
Query 1 aaaaaaa-aGAAATGGTTGATATGGATTGGAAGAGGAAGATGGCATCATCAGATTTACCA 59
||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 AAAAAAATAAAAATGGTTGATATGGATTGGAAGAGGAAGATGGTATCATCAGATTTACCA 120
Query 60 AACTCACCTAAGCTTTCTTCAAAGCTTCACGTAACTATTCCATCACCATTCAAAATCGTC 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AACTCACCTAAGCTTTCTTCAAAGCTTCACGTAACTATTCCATCACCGTTCAAAATCGTC 180
Query 120 CCTGTTTCGTCTCCGATCTCTTGTTCCGCACCAGCGCTTTGCTCTGCTTACGAGCTTTAC 179
|||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 181 CCTGTTTCATCTCCGATCTCATGTTCAGCACCTGCTCTTTGCTCTGCTTACGAGCTTTAC 240
Query 180 CTTCGTCTTCCTGAGCTAAGAAAGCTCTGGTCATCTCGTGATTTTCCTAC-GTGGACGTC 238
|||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 241 CTTCGTCTCCCTGAGCTAAGAAAGCTCTGGTCATCTCGTGATTTTCCT-CAATGGACATC 299
Query 239 AGAGCCGATTCTTAAACCGGCTCTTCAAGCTTTGGAGATCAGTTTTAGATTAGTTTTCGC 298
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 AGAGCCGATTCTCAAACCAGCTCTTCAAGCTTTGGAGATCAGTTTCAGATTAGTTTTCGC 359
Query 299 CGTTTGTTCTGATACTAGACCGTATATCAACCACCGTGAATGGAACCGGAGGCTAGATTC 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CGTTTGTTCTGATACTAGACCGTACATCAACCACCGTGAATGGAACCGGAGGCTAGATTC 419
Query 359 TCTCGTCACGAAGCAGATCCAGCTTGTAGCAGCGATCTGCGAAGAAGACGATGAAGAAGA 418
|||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 420 TCTCATCACGAAGCAGATCCAGCTTGTAGCAGCGATCTGCGAAGATGA--A-GAAGAAGA 476
Query 419 AGGT-GA-C-TCGGAGGTTCCGGTCAGCGATGGACGGAGTTCGTTGAGTTTGTTACCGCA 475
|||| | | |||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 477 AGGTATATCAGCGGAGGCTCCGGTCGGCGGTGGACGGAGTTCGTTGAGTTTGTTACCGCA 536
Query 476 GCTAGCTACGTGGAGGAGATCGGAAGCTTTAGGGAAGAAGATCTTATCTACGATCGATAA 535
||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||
Sbjct 537 GCTAGCTACGTGGAGGAGATCAGAGGCTTTGGGGAAGAAGATCTTATATACGATCGATAA 596
Query 536 CGAGATGAGTCGGTGTAAGTACACGCTTGGACTCGGTGAGCAAAACATCGCCGGAAAACC 595
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 597 CGAGATGAGTCGGTGTAAGTACACGCTCGGACTCGGTGAACAAAACATCGCCGGAAAACC 656
Query 596 AAATCTCCGGTACGATGCGATTTGCCGACCTAACGAGATCTATAGCCTCAAGGATAATCC 655
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 AAATCTCCGGTACGATGCGATTTGCCGACCAAACGAGATCTATAGCCTCAAGGATAATCC 716
Query 656 ATTCGCAGATCATATCGATAATCAAGAGAATCAAACGCTCTATATCATTCACCAGATCCT 715
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 717 ATACGCAGATCATATCGATAATCACGAGAATCAAACTCTCTATATCATTCACCAGATCCT 776
Query 716 CGAATCGTGGATCTACGCATCTGGAAATCTTCTGAATCGAATCGTCTCCAGTATCGAAGA 775
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 CGAATCGTGGATCTACGCATCTGGAAATCTTCTGAATCGAATCGTCTCAAGTATCGAAGA 836
Query 776 AGAGAAATTCGAAAAAGCTTCTAACGATGTTTACTTGCTGGAGAAGATCTGGAAACTTTT 835
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 837 AGAGAAATTCGGAAAAGCTTCAAACGATGTTTACTTGCTGGAGAAGATCTGGAAAATTTT 896
Query 836 AGCGGAGATTGAAGATCTTCATATGTTGATGGATCCGGAGGATTTTCTGAAATTGAAGAA 895
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 897 AGCGGAGATTGAAGATCTTCATATGTTGATGGATCCGGAAGATTTTTTGAAATTGAAGAA 956
Query 896 GCAGTTACAGATCAAATCGACGGGGAAAAACGATGCGTTTTGTTTCAGATCTAAAGGGTT 955
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 957 ACAGTTACAGATCAAATCGACGGGTAAAAACGATGCGTTTTGTTTCAGATCTAAAGGATT 1016
Query 956 AGTGGAGATGATGAAGATGTCGAAAGATCTGAGGCAGAAAGTACCGGCGGTGTTGGCGGT 1015
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1017 AGTGGAGATGATGAAGATGTCGAAAGATCTGAGACAGAAAGTACCGGCGGTCTTGGCGGT 1076
Query 1016 TGAGGTAGATCCAACCGGAGGACCGAGATTGCAAGAGGCGGCGATGAAGCTTTACGCGAC 1075
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1077 TGAGGTAGATCCAACCGGAGGACCAAGATTACAAGAGGCGGCGATGAAGCTTTACGCGAG 1136
Query 1076 GAAGAGAGAGTGCGATAAGATTCATCTGCTTCAGGGGATGCAAGCGGTTGAAGCGGCGGC 1135
||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1137 GAAGACAGAGTGCGATAAGATTCATTTGCTTCAGGGGATGCAAGCGGTGGAAGCGGCGGC 1196
Query 1136 GAAGAGTTTCTTCTTCTCG-TATAGGCAGCTAGTGGCGGCGATGATGGGAAGCGCGGAGA 1194
||||||||||||||| | | ||||||||| |||||||||| ||||||||||| |||||||
Sbjct 1197 GAAGAGTTTCTTCTT-TGGGTATAGGCAGTTAGTGGCGGCTATGATGGGAAGTGCGGAGA 1255
Query 1195 CGAACGCGACGGCGAGTCAAGAGTCGTGTGACTCGTTGAGTCAGATATTTATGGAGCCGA 1254
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1256 TGAACGCGACGGCGAGTCAAGAGTCGTGTGACTCACTGAGTCAGATATTTATGGAGCCGA 1315
Query 1255 CGTATTTCCCGAGTCTTGACGCGGCAAAGAC-TTTCTTGGGAGAGTTCTGGAGTCATTTG 1313
||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 1316 CGTATTTCCCGAGCCTTGACGCGGCAAAGACGTTTCT-GGGAGAGTTTTGGAGTCATTTG 1374
Query 1314 GGATGATTCA-TTTTAA-----------AT--T-ATTTAA-AT---T-------GGTGGT 1347
|||||||| | |||||| || | |||||| || | ||||||
Sbjct 1375 GGATGATTAAATTTTAATTTCTGCTGGTATAATTATTTAATATAAATTTAAATTGGTGGT 1434
Query 1348 TTGGTT-AATTTAGTTTGTAAGATACTGAAATTTTTGGAACATTTGACGATCCATATTTG 1406
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1435 TTGGTTTAATTTAGTTTGTAAGATAGTGAAATTTTTGGAACATTTGACGATCCATATTTG 1494
Query 1407 AATACAAATTCATT 1420
||||||||||||||
Sbjct 1495 AATACAAATTCATT 1508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69979559730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5