BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483041
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40010.1 | Symbols: | Ribosomal protein L10 family protein ... 1709 0.0
AT2G40008.1 | Symbols: | other RNA | chr2:16708056-16709436 FO... 809 0.0
AT3G09200.1 | Symbols: | Ribosomal protein L10 family protein ... 625 3e-178
> AT2G40010.1 | Symbols: | Ribosomal protein L10 family protein
| chr2:16708379-16710448 REVERSE LENGTH=1153
Length=1153
Score = 1709 bits (925), Expect = 0.0
Identities = 1042/1098 (95%), Gaps = 9/1098 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTGAAAGGAACAAAAGCAGAGAAGAAGATCGTTTACGATTCGAAGCTTTGTCAG 60
||||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGGTGAAAGCAACAAAGGCGGAGAAGAAGATCGTTTACGATTCAAAGCTTTGTCAG 60
Query 61 CTTTTGAATGAGTACCCTCAGATTCTTGTCGTTGCAGCTGACAATGTTGGATCCACTCAG 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTTTTGAATGAGTACTCTCAGATTCTTGTCGTTGCAGCTGACAATGTTGGATCAACTCAG 120
Query 121 CTTCAGAACATTCGAAAAGGTTTACGAGGTGATTCAGTTGTTTTGATGGGGAAAAACACA 180
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CTTCAGAACATAAGGAAAGGTTTACGAGGTGATTCAGTTGTTTTGATGGGGAAGAACACA 180
Query 181 ATGATGAAGAGATCTGTGAGGCTCCATGCTGATAAAACTGGCAATCAAGCTTTCCTCAAT 240
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 181 ATGATGAAGAGATCTGTGAGGATTCATGCTGATAAAACTGGCAATCAAGCTTTCCTCAGT 240
Query 241 CTCCTTCCTCTTCTTCAGGGGAATGTTGGGTTGATCTTCACTAAGGGTGACTTGAAGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCTTCCTCTTCTTCAGGGGAATGTTGGGTTGATCTTCACTAAGGGTGACTTGAAGGAA 300
Query 301 GTCAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTAGGTTTAATCGCG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GTCAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTAGGTTTAGTCGCT 360
Query 361 CCAATTGATGTGGTCGTGCAACCAGGCAACACTGGTCTTGACCCTTCACAGACATCCTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CCAATTGATGTGGTCGTGCAACCAGGCAACACTGGTCTTGACCCTTCACAGACCTCCTTC 420
Query 421 TTCCAGGTGCTTAACATTCCAACCAAAATCAACAAAGGTACGGTTGAGATCATAACCCCC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCCAGGTGCTTAACATTCCAACCAAAATCAACAAAGGTACGGTTGAGATCATAACCCCT 480
Query 481 GTGGAGCTCATCAAGAAAGGTGACAAAGTCGGTTCATCTGAGGCTGCGCTTCTAGCCAAG 540
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 481 GTGGAGCTCATCAAGAAAGGCGACAAAGTCGGTTCATCCGAGGCTGCGCTTCTTGCCAAG 540
Query 541 CTTGGAATCAGGCCATTCTCTTATGGCCTCGTCGTTGAGTCAGTCTACGATAATGGCTCA 600
|||||||||||||| || || ||||| ||||| ||||||||||||||||||||||| |||
Sbjct 541 CTTGGAATCAGGCCCTTTTCGTATGGTCTCGTTGTTGAGTCAGTCTACGATAATGGGTCA 600
Query 601 GTGTTTAACCCTGAAGTGCTTAACCTCACTGAAGACGACCTTGTTGAGAAGTTTGCAGCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGTTTAACCCTGAAGTGCTTAACCTCACTGAAGACGACCTTGTTGAGAAGTTTGCAGCT 660
Query 661 GGTGTCTCGATGATCACCGCGCTTTCTCTTGCAATATCTTACCCAACCGTAGCAGCTGCG 720
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GGTGTCTCGATGATCACTGCGCTTTCTCTTGCAATCTCTTACCCAACCGTAGCAGCTGCG 720
Query 721 CGTCACATGTTCCTCAATGCTTACAAGAATGTTCTTGATGTTGCCTTAGCTACTGAGTAT 780
| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 721 CCTCACATGTTCCTCAATGCTTACAAGAACGTTCTTGCTGTTGCCTTAGCTACTGAGTAC 780
Query 781 TCTTTCCCTCAGGCTGAGAATGTGAAGGAGTTCCTAAAGGATCCAACCAAGTTTGCAGTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCTTTCCCTCAGGCTGAGAATGTGAAGGAGTTCCTAAAGGATCCAACCAAGTTTGCAGTT 840
Query 841 GCAGCGGCTGCACCGGATTT-AGGAGACTCTGGTGGAGCTGTTGTGGCAGTAGCTGTGGA 899
|||| ||||||||||| ||| |||||| ||||||||||| || |||||||||||||| ||
Sbjct 841 GCAGTGGCTGCACCGG-TTTCAGGAGAGTCTGGTGGAGCAGTGGTGGCAGTAGCTGTTGA 899
Query 900 GGAAGAAGCTGCAGAAGAGTCTGATGAGGACATGGGATTCGATTTGTTCGGTTAAAATAC 959
|||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 900 GGAAGAAGCTGCAGAAGAGTCTGATGGGGACATGGGATTTGATCTGTTCGGTTAAAATAC 959
Query 960 ACCTGTCTTATCTTTTGCCAACCTTTCCTATTTATTTTTTATGGACCTTTTAAATTTTCA 1019
||| |||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||
Sbjct 960 ACC-GTCTTATCTTTTGCCAGCCTTTCCTATTTATTTT--ATGGACCTTTAAAACTTTCA 1016
Query 1020 CGTTCAGAATATCATTGTTGCACGTTTATGGATATTTTGTTTTTTCATCAAATA-TACCT 1078
|||||||||| || ||||| ||||||||||||||||||||| ||||||||| | |||||
Sbjct 1017 CGTTCAGAATTTCTTTGTT--ACGTTTATGGATATTTTGTTTCTTCATCAAA-ACTACCT 1073
Query 1079 TTCTGGTTTTAATTTCTC 1096
||||||||||||||||||
Sbjct 1074 TTCTGGTTTTAATTTCTC 1091
> AT2G40008.1 | Symbols: | other RNA | chr2:16708056-16709436
FORWARD LENGTH=1296
Length=1296
Score = 809 bits (438), Expect = 0.0
Identities = 476/495 (96%), Gaps = 0/495 (0%)
Strand=Plus/Minus
Query 326 AGGTTGGAGCTCCTGCTCGTGTAGGTTTAATCGCGCCAATTGATGTGGTCGTGCAACCAG 385
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1148 AGGTTGGAGCTCCTGCTCGTGTAGGTTTAGTCGCTCCAATTGATGTGGTCGTGCAACCAG 1089
Query 386 GCAACACTGGTCTTGACCCTTCACAGACATCCTTCTTCCAGGTGCTTAACATTCCAACCA 445
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1088 GCAACACTGGTCTTGACCCTTCACAGACCTCCTTCTTCCAGGTGCTTAACATTCCAACCA 1029
Query 446 AAATCAACAAAGGTACGGTTGAGATCATAACCCCCGTGGAGCTCATCAAGAAAGGTGACA 505
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1028 AAATCAACAAAGGTACGGTTGAGATCATAACCCCTGTGGAGCTCATCAAGAAAGGCGACA 969
Query 506 AAGTCGGTTCATCTGAGGCTGCGCTTCTAGCCAAGCTTGGAATCAGGCCATTCTCTTATG 565
||||||||||||| |||||||||||||| |||||||||||||||||||| || || ||||
Sbjct 968 AAGTCGGTTCATCCGAGGCTGCGCTTCTTGCCAAGCTTGGAATCAGGCCCTTTTCGTATG 909
Query 566 GCCTCGTCGTTGAGTCAGTCTACGATAATGGCTCAGTGTTTAACCCTGAAGTGCTTAACC 625
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 908 GTCTCGTTGTTGAGTCAGTCTACGATAATGGGTCAGTGTTTAACCCTGAAGTGCTTAACC 849
Query 626 TCACTGAAGACGACCTTGTTGAGAAGTTTGCAGCTGGTGTCTCGATGATCACCGCGCTTT 685
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 848 TCACTGAAGACGACCTTGTTGAGAAGTTTGCAGCTGGTGTCTCGATGATCACTGCGCTTT 789
Query 686 CTCTTGCAATATCTTACCCAACCGTAGCAGCTGCGCGTCACATGTTCCTCAATGCTTACA 745
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 788 CTCTTGCAATCTCTTACCCAACCGTAGCAGCTGCGCCTCACATGTTCCTCAATGCTTACA 729
Query 746 AGAATGTTCTTGATGTTGCCTTAGCTACTGAGTATTCTTTCCCTCAGGCTGAGAATGTGA 805
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 728 AGAACGTTCTTGCTGTTGCCTTAGCTACTGAGTACTCTTTCCCTCAGGCTGAGAATGTGA 669
Query 806 AGGAGTTCCTAAAGG 820
|||||||||||||||
Sbjct 668 AGGAGTTCCTAAAGG 654
Score = 246 bits (133), Expect = 3e-64
Identities = 159/171 (93%), Gaps = 3/171 (2%)
Strand=Plus/Minus
Query 818 AGGATCCAACCAAGTTTGCAGTTGCAGCGGCTGCACCGGATTT-AGGAGACTCTGGTGGA 876
||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||
Sbjct 574 AGGATCCAACCAAGTTTGCAGTTGCAGTGGCTGCACCGG-TTTCAGGAGAGTCTGGTGGA 516
Query 877 GCTGTTGTGGCAGTAGCTGTGGAGGAAGAAGCTGCAGAAGAGTCTGATGAGGACATGGGA 936
|| || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 515 GCAGTGGTGGCAGTAGCTGTTGAGGAAGAAGCTGCAGAAGAGTCTGATGGGGACATGGGA 456
Query 937 TTCGATTTGTTCGGTTAAAATACACCTGTCTTATCTTTTGCCAACCTTTCC 987
|| ||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 455 TTTGATCTGTTCGGTTAAAATACACC-GTCTTATCTTTTGCCAGCCTTTCC 406
> AT3G09200.1 | Symbols: | Ribosomal protein L10 family protein
| chr3:2823090-2825114 REVERSE LENGTH=1331
Length=1331
Score = 625 bits (338), Expect = 3e-178
Identities = 682/848 (80%), Gaps = 24/848 (3%)
Strand=Plus/Plus
Query 7 GTGAAAGGAACAAAAGCAGAGAAGAAGATCGTTTACGATTCGAAGCTTTGTCAGCTT-TT 65
||||||| ||| || |||||||||||||||| |||||| | ||||| ||||||||| |
Sbjct 98 GTGAAAGCAACTAAGGCAGAGAAGAAGATCGCCTACGATACCAAGCTATGTCAGCTTATC 157
Query 66 GAATGAGTAC-CCTCAGATTCTT-GTCGTTGCAGCTGACAATGTTGGATCCACTCAGCTT 123
| |||||||| || |||| |||| |||||||| || || || || ||||| |||||||||
Sbjct 158 G-ATGAGTACACC-CAGA-TCTTGGTCGTTGCGGCCGATAACGTCGGATCAACTCAGCTT 214
Query 124 CAGAACATTC-GAAAAGGT-TTACGAGGTGATTCAGTTGT-TTTGATGGGGAAAAACACA 180
||||||| || |||| ||| || || || || || || || || |||||||| |||||
Sbjct 215 CAGAACA-TCAGAAAGGGTCTT-CGTGGAGACTCCGTCGTGCTT-ATGGGGAAGAACACT 271
Query 181 ATGATGAAGAGATCTGTGAGGCTCCA-TGCTGATAAAACTGGCAATCA-AGCTTTCCTCA 238
||||||||| | || || ||| | || | |||| || || || || || || |||| |
Sbjct 272 ATGATGAAGCGTTCCGTTAGGATTCACT-CTGAGAACACCGG-AAACACTGCAATCCTGA 329
Query 239 ATCTCCTTCCTCTTCTTCAGGGGAATGTTGGGTTGATCTTCACTAAGGGTGACTTGAAGG 298
|||| |||||||| |||||||| || ||||| |||||||| || || |||||| | ||||
Sbjct 330 ATCTGCTTCCTCTCCTTCAGGGAAACGTTGGTTTGATCTTTACCAAAGGTGACCTCAAGG 389
Query 299 AAGTCAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTAGGTTTAATCG 358
|||| || || ||||||||||||||||||||||| || ||||||||||| ||||| | |
Sbjct 390 AAGTGAGCGAGGAGGTTGCTAAGTACAAGGTTGGTGCCCCTGCTCGTGTGGGTTTGGTGG 449
Query 359 CGCCAATTGATGTGGTCGTGCAACCAGGCAACACTGGTCTTGACCCTTCACAGACATCCT 418
| |||||||||||||| || ||||| |||||||||||||| ||||| || || ||||| |
Sbjct 450 CTCCAATTGATGTGGTTGTCCAACCTGGCAACACTGGTCTCGACCCATCCCAAACATCTT 509
Query 419 TCTTCCAGGTGCTTAACATTCCAACCAAAATCAACAAAGGTACGGTTGAGATCATAACCC 478
||||||||||||||||||| |||||||| || ||||| ||||| || || ||||| ||||
Sbjct 510 TCTTCCAGGTGCTTAACATCCCAACCAAGATTAACAAGGGTACCGTCGAAATCATCACCC 569
Query 479 CCGTGGAGCTCATCAAGAAAGGTGACAAAGTCGGTTCATCTGAGGCTGCGCTTCTAGCCA 538
| || ||||| |||||| |||||||||| ||||| || ||||||||||||||||||||||
Sbjct 570 CAGTTGAGCTTATCAAGCAAGGTGACAAGGTCGGGTCTTCTGAGGCTGCGCTTCTAGCCA 629
Query 539 AGCTTGGAATCAGGCCATTCTCTTATGGCCTCGTCGTTGAGTCAGTCTACGATAATGGCT 598
||||||| |||||||| ||||| ||||| || || || |||| ||||| || |||||||
Sbjct 630 AGCTTGGCATCAGGCCGTTCTCATATGGTCTTGTTGTCCAGTCTGTCTATGACAATGGCT 689
Query 599 CAGTGTTTAACCCTGAAGTGCTTAACCTCACTGAAGACGACCTTGTTGAGAAGTTTGCAG 658
|||| || | ||| || || ||| | || ||||||||| | ||||| |||||||||||
Sbjct 690 CAGTCTTCAGCCCAGAGGTTCTTGATCTTACTGAAGACCAACTTGTGGAGAAGTTTGCTT 749
Query 659 CTGGTGTCTCGATGATCACCGCGCTTT-CTCTTGCAATATCTTACCCAACCGTAGCAGCT 717
||||| |||| ||| |||| | ||| ||||||| | || ||||| ||| | || |||
Sbjct 750 CTGGTATCTCCATGGTCACTTC-CTTGGCTCTTGCTGTGTCGTACCCTACCCTTGCTGCT 808
Query 718 GCGC-GTCACATGTTCCTCAATGCTTACAAGAATGTTCTTGA-TGTTGCC-TTAGCTACT 774
|| | | || |||||| ||||||| |||||||||| |||| | |||| || || |||
Sbjct 809 GCACCG-CATATGTTCATCAATGCGTACAAGAATGC-CTTGGCTATTGCTGTT-GCCACT 865
Query 775 GAGTATTCTTTCCCTCAGGCTGAGAATGTGAAGGAGTTCCTAAAGGATCCAACCAAGTTT 834
||||| | |||||||| || ||||| || ||||| | | | |||||||||| |||||||
Sbjct 866 GAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGGAATACTTGAAGGATCCAAGCAAGTTT 925
Query 835 GCAGTTGC 842
|| |||||
Sbjct 926 GCTGTTGC 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5