BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483043
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40060.1 | Symbols: | Clathrin light chain protein | chr2:1... 1565 0.0
> AT2G40060.1 | Symbols: | Clathrin light chain protein | chr2:16726484-16728185
FORWARD LENGTH=1041
Length=1041
Score = 1565 bits (847), Expect = 0.0
Identities = 931/971 (96%), Gaps = 8/971 (1%)
Strand=Plus/Plus
Query 1 AGAGATGTCTGTCTTTGAAGACGATTCCTTCGTCATACTCAACGATGATGCGTCTGAGTC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AGAGATGTCTGCCTTTGAAGACGATTCCTTCGTCATACTCAACGATGATGCGTCTGAGTC 136
Query 61 TGTTCCAGTCTCAGGCTCTTTTGACGCCACTGACTCTTTCTCAGCCTACGACGGCTCAGT 120
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |
Sbjct 137 TGTTCCAGTCTCAGGCTCTTTTGACGCCACTGATTCTTTCTCAGCTTTCGACGGCTCACT 196
Query 121 CCAAGTCGATGACTCCGTCGACGATGTTTTTGCAGCGCCTTCTTCTGACTACGGTGCTTA 180
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 197 CCAAGTCGAGGACTCCGTCGACGATGTTTTTGCAGCGCCGTCTTCTGACTACGGTGCTTA 256
Query 181 CTCGAACGGTGACGGCGTCTTCGGATCCAACGGTGAACACGACGGTCCTATCTTGCCACC 240
||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 257 CTCCAACGGTGACGGCATCTTCGGATCCAACGGGGATCACGACGGTCCTATCTTGCCACC 316
Query 241 ACCGTCGGAGATGGAATCAGATGAGGGATTTGCTCTTAGAGAATGGAGAAGACATAATGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 317 ACCGTCGGAGATGGAATCAGATGAGGGATTTGCTCTTAGAGAATGGAGAAGACAAAATGC 376
Query 301 AATTCAACTTGAAGAGAAGGAGAAGAGAGAAAAGGAATTGTTGAAGCAAATTATTGAGGA 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 AATTCAACTTGAGGAGAAGGAGAAGAGAGAAAAGGAATTGTTGAAGCAAATTATTGAGGA 436
Query 361 AGCTAATCAATACAAAGAAGAGTTCCATAAGAAGATTGAAGTAACTTGTCAAAACAACAA 420
|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 437 AGCTGATCAATACAAAGAAGAGTTTCATAAGAAGATTGAAGTAACTTGTGAAAACAACAA 496
Query 421 AGCAGCTAACAGGGAGAAGGAAAAGCTGTATCTGGAGAACCAAGAGAAGTTCTACGCGGA 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AGCAGCTAACAGAGAGAAGGAAAAGCTGTATCTGGAGAACCAAGAGAAGTTCTACGCGGA 556
Query 481 ATCCAGCAAGAATTACTGGAAGGCAATAGCAGAGCTAGTTCCTAAAGAGGTTCCAACAAT 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 557 ATCCAGCAAGAATTACTGGAAGGCAATAGCAGAGCTAGTTCCTAAAGAAGTTCCAACAAT 616
Query 541 AGAGAAAAGAAGAGGAAAGAAAGAGCAACAAGACCCTAAGAAGCCATCAATCTCTGTGAT 600
||||||||| |||||||| |||||||||||||| |||||||||||| || ||||||||||
Sbjct 617 AGAGAAAAGGAGAGGAAAAAAAGAGCAACAAGATCCTAAGAAGCCAACAGTCTCTGTGAT 676
Query 601 TCAAGGTCCAAAGCCCGGTAAGCCAACCGATCTAACAAGAATGAGACAAATATTGGTGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TCAAGGTCCAAAGCCCGGTAAGCCAACCGATCTAACAAGAATGAGACAAATATTGGTGAA 736
Query 661 GCTCAAACACAACCCACCTTCTCACCTGAAGCTCACTTCTCAACCTCCATCGGATGAGGC 720
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 737 GCTCAAACACAACCCACCTTCTCACCTGAAACTCACTTCTCAACCTCCATCGGAGGAGGC 796
Query 721 GGCTGCTCCTCCAAAGAATGTTCTCGAAACCAAGCCCACTGAGGCGGTTACTGCTGCTTA 780
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 797 GGCTGCTCCTCCAAAGAATGTTCCCGAAACCAAGCCCACTGAGGCAGTTACTGCTGCTTA 856
Query 781 AAAACCTC-TTTGGTTTTCTTATTCATTGCTTACATCTTGTGTGAATTCGGTCTTTGCAT 839
|||||||| |||| ||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 857 AAAACCTCCTTTG-TTTTCTTATTCGTTGCTTACATCT-GTGTGAATTCAGTCTTTGCAT 914
Query 840 TTCATTATGTGTTATAAACAGCTGAGAGATCTTATGGGTCATGTGTGTTATTAACATAAT 899
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 915 TTCATTATGTGTTATAAACAGCTGAGAGATTTTATGGTTCATGTGTGTTATTAACATAAT 974
Query 900 TATGTCATATTGGAATGATAACTTTTTATGTTTGAATTCAGTCAGTTACCATTGAAAAGT 959
||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 975 TATGTCATATTGGAATGATAACTTTTTATGTTT---T--AGTCAGTTACCATTGAATAGT 1029
Query 960 GGTTAATATCT 970
|||||||||||
Sbjct 1030 GGTTAATATCT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5