BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483047

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40085.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   479    8e-135


> AT2G40085.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16736461-16737259 
REVERSE LENGTH=449
Length=449

 Score =  479 bits (259),  Expect = 8e-135
 Identities = 305/327 (93%), Gaps = 4/327 (1%)
 Strand=Plus/Plus

Query  29   CTCTATAATCTCCCC-GCCGATCAATAATAACATTTTCTCCGATGGAAGAGAGTGATGCT  87
            ||||||||||||||| | ||||||||||  ||||||||||||||||||||||||||||||
Sbjct  54   CTCTATAATCTCCCCTG-CGATCAATAAGGACATTTTCTCCGATGGAAGAGAGTGATGCT  112

Query  88   GTTCCAAAACCAGTTGTTGTTGACCCTCCATTATACGACGAAGCTCCTCCTTCGGCTTCT  147
            ||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||
Sbjct  113  GTTCCAAAACCAGTTGTTGTTGATCCTCCATTATACGACGAAGCTTCTCCGTCAGCTTCT  172

Query  148  C-GACGCCGGCCGGTGATGATCGCCGCCGATGCAGCTCCTCCAGAAGAAAATCATCTCAT  206
            | | ||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct  173  CAG-CGCCGTCCGGTGGTGATCGCCGCCGATGCAGCTCCTCCGGCAGAAAATCATCTCAT  231

Query  207  TCAGCGGATTCAAAGAGCTCTTGTGGAATTGCGTGAATTGAGAAATCAGTTTAATGCTAT  266
            |||  |||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct  232  TCAAAGGATTCAAAGAGCTCTTGTGGAATTGCGCGAGTTGAGAAATCAGTTTAATGCCAT  291

Query  267  TCTTAGGGAACTAGAAGTCGAAGTAGGAGAAGAAGAAGAGCAAGCGGAATCATCAGTGGA  326
            |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  292  TCTTAGGGAACTAGAATTCGAAGTGGGAGAAGAAGAAGAGCAAGCGGAATCATCAGTGGA  351

Query  327  GGATCCAGAGGACTCTGATTCTTAGTT  353
             ||||||||||||||||||||||||||
Sbjct  352  AGATCCAGAGGACTCTGATTCTTAGTT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16538089421


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5