BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483048
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40090.1 | Symbols: ATATH9, ATH9 | ABC2 homolog 9 | chr2:167... 2953 0.0
> AT2G40090.1 | Symbols: ATATH9, ATH9 | ABC2 homolog 9 | chr2:16737466-16740370
REVERSE LENGTH=1903
Length=1903
Score = 2953 bits (1599), Expect = 0.0
Identities = 1776/1862 (95%), Gaps = 10/1862 (1%)
Strand=Plus/Plus
Query 1 GCGTTCATTACGTGCTTCCTCAATGGCGGCACGATCCCTTTGGAGAACCCGTACGAAGCT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 46 GCGTTCATTACGTGCTTCCTCAATGGCGGCACGATCCCTATGGAGAACCCGTACGAAGCT 105
Query 61 CCTCGTTGTTGGTACCTCTTTATGCGGTGGTTCCGGCGCCGCCTTCATTGCTTCCTCCGA 120
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 106 CCTCGTTGTTGGTACCGCCTTATGCGGTGGTTCCGGCGCCGCCTTCATTGCTTCCTCCGA 165
Query 121 TGACCCATCAACCACCCTCAAGCTTTGCACCTCCATCCCCGTCCGCCTCTACCGCAATAC 180
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 166 TGACCCATCAACAACCCTCAAGCTTTGCACCTCCATCCCCGTTCGTCTCTACCGCAATAC 225
Query 181 CGTTACCGCCGCCTCTATCGCTTTCGATTATGAATACTCATTGTTGGGTTTGGCTGAGGG 240
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 226 CGTTACCGCCGCCTCTATTGCTTTCGATTATGAGTACTCGTTGTTGGGTTTGGCTGAGGG 285
Query 241 AAGCAGTGAGAGGGCTAAGGTCAAACATGAAGTCCACCTAAGGTCAGCTCAAAAGCTTCA 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 AAGCAGTGAGAGAGCTAAGGTCAAACATGAAGTCCACCTAAGGTCAGCTCAAAAGCTTCA 345
Query 301 AGAGCTTTGTTTCAAAAATGGAGGAATCTATATCAAACTCGGCCAACATATAGGACAACT 360
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AGAGCTCTGTTTTAAAAATGGAGGAATCTATATCAAACTCGGCCAACATATAGGACAACT 405
Query 361 TGAATATCTTGTGCCTGAAGAGTATGTTTGTACTATGAGAGAGTCCATGTTGAACAAATG 420
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 406 AGAATATCTTGTGCCTGAAGAGTATGTTCGTACTATGAGGGAGTCCATGTTGAACAAATG 465
Query 421 CCCTGTTTCTTCGTATGAGCAAGTATGTGAGGTTTTCAAGAAAGAGGTTGGAGAGATGCC 480
|||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 466 CCCTATTTCTTCATATGAGCAAGTATGTGAGGTTTTTAAGAAAGAGGTTGGAGAGATGCC 525
Query 481 AGACAAAGTATTTGCTGAATTTGACCCTGTTCCAATTGCAAGTGCTTCCCTTGCTCAAGT 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AGACCAAGTATTTGCTGAATTTGACCCTGTTCCAATTGCAAGTGCTTCCCTTGCTCAAGT 585
Query 541 TCATGTTGCTCGCACCCATGATGGaaaaaaaGTTGCTGTCAAGGTTCAACATGCGCACAT 600
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 586 TCATGTTGCTCGCACTCATGATGGAAAAAAGGTTGCTGTCAAGGTTCAACATGCGCACAT 645
Query 601 GACAGACACTGCTGCTGCGGACACTGCTGCTGTGGGAGTTTTAGTGAACACCTTGCACAG 660
|||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||| |
Sbjct 646 GACAGACACTGCAGCTGCGGACACTGCAGCTGTTGGAGTTTTAGTGAATACCTTGCACCG 705
Query 661 GATATTCCCATCATTTGACTATAGGTGGTTGCTAGACGAAATGAGTGAAAGCTTACCAAA 720
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 706 AATATTCCCATCATTTGACTATAGGTGGTTGCTCGACGAAATGAGTGAAAGCTTACCAAA 765
Query 721 GGAACTAGATTTTTTGGTTGAGGCAAAAAACAATGAGAAATGTCTGGATAATTTTAGGAA 780
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 766 GGAACTAGATTTTTTGGTTGAGGCGAAAAACAATGAGAAATGTCTGGATAATTTTAGGAA 825
Query 781 GCTGTCTCCCCATATTGCAGAGTATGTTTATGCGCCAACAATCTATTGGAATTTGAGTAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GCTGTCTCCCCATATTGCAGAGTATGTTTATGCGCCAACAATCTATTGGAATTTGAGTAC 885
Query 841 CTCTAAGTTGTTGACAATGGAGTTCATGGATGGTGCTCAAGTGAACGATGTTGCTAAGAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 886 CTCTAAGTTGTTGACAATGGAGTTCATGGATGGTGCTCAAGTGAACGATGTTGATAAGAT 945
Query 901 CAGAAAGCTTGGGATTCAGCCCTATGAAGTATCAAAGCTTGTGAGTCAAACTTTTGCAGA 960
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 946 CAGAAAGCTTGGGATTCAGCCCTATGAAGTATCAAAGCTCGTGAGTCAAACATTTGCAGA 1005
Query 961 AATGATGTTTAAACATGGGTTTGTGCACTGTGACCCACACGCTGCCAATTTGATTGTTCG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AATGATGTTTAAACATGGGTTTGTGCACTGTGACCCACACGCTGCCAATTTGATTGTTCG 1065
Query 1021 TCCAGATCCTTCTGGTAAAAGGAACATATATGGCAAGAGAAAACCGCAACTAGTGATTCT 1080
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1066 TCCAGATCCTTCTGGTAAGAGGAACATATATGGCAAGAGAAAACCGCAATTAGTGATTCT 1125
Query 1081 TGACCATGGCTTGTACAAGGAGCTTGACTTCAACACAAGATTCCACTATGCTTCACTATG 1140
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1126 TGACCATGGCTTGTACAAGGAGCTTGACTTCAACACAAGATTCAACTATGCTTCACTGTG 1185
Query 1141 GAAAGCGTTGGTCTTTTCGGATGCTAAAGCCATTAAAGAACACAGCGCGAAATTAGGCGC 1200
|||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1186 GAAAGCATTGGTCTTTTCGGATGCTAAAGCCATTAAAGAACACAGTGAGAAATTAGGCGC 1245
Query 1201 TGGAGATGATCTATACGTGCTATTCGCGGGGATTCTTACAATGAGACCATGGAAGCAAGT 1260
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1246 TGGAGATGATCTATACGTCCTATTCGCCGGGATACTTACAATGAGACCATGGAAGCAAGT 1305
Query 1261 CATTGACACATCTGTGGATCATTTAGTCATCCAAGGCAGCAAAGAAGATGTATCAGAGCT 1320
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1306 CATCGACACATCTGTGGATCATTTAGTCATCCAAGGCAACAAAGAAGATGTATCAGAGCT 1365
Query 1321 ACAGATGTATGCATCACAGTACTTCTCCGAAATCTCAGAGCTTCTGAGGAGATTGCCACG 1380
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1366 ACAGATGTATGCATCACAGTACTTCTCCGAAATCTCAGAGCTTCTCAGGAGATTGCCACG 1425
Query 1381 CGTAATCCTTCTGATGCTGAAAACAAACGACTGTCTGCGGTCGGTTAACAATGAACTAAT 1440
||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1426 CGTGATCCTTCTGATGCTGAAAACAAACGACTGTCTCCGGTCAGTTAACAATGAGCTAAT 1485
Query 1441 GCAAGGATCGTCGCTGGAGTCGTTCTTGATCATCGGGAAAGTATCTTCGCAAGCGGTTTT 1500
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1486 GCAAGGATCGTCTCTCGAGTCGTTCTTGATCATCGGGAAAGTATCTTCCCAAGCGGTTTT 1545
Query 1501 AGAGGCAAAGAG-GTCTGAAAAGAAATCGTTGATGAAATGGCTAAAGGTATGGCTTGAAG 1559
|||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1546 AGAGGCAAAGAGAG-CTGAAAAGAAATCGTTGATGAAATGGCTGAAGGTATGGTTTGAAG 1604
Query 1560 GATTCTCTGTTGAAGCAAGGCTTTGGGTAATGCAATTTGCACTTTGGGTCTTACAAGTCA 1619
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1605 GGTTCTCTGTTGAAGCAAGGCTTTGGGTAATGCAATTTGCACTTTGGATCTTACAAGTCA 1664
Query 1620 GAAAATCCTTAACC-TTATGATATATAATGT-CATAAACCAATTA-ATATTACACATCTT 1676
|||||||||||||| || | ||||| || || | | |||||| |||||||||| ||
Sbjct 1665 GAAAATCCTTAACCCTT-TAATATAAAACGTTCCTG--CCAATTTTATATTACACACCTC 1721
Query 1677 TCTCTATTCTTTGGTAAGTGGGTTTCAAAAT-TAACATTTATCATTCTTTGTATACTACA 1735
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1722 TCTCTATTCTTTGGTAAGTGGGTATCAAAAAATAACATTTATCATTCTTTGTATACTACA 1781
Query 1736 CAAGGCTGTTATGTACCAAACCAATAAATCAACTTTATATGTACTATAAGATTTGTATTA 1795
||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 1782 CAAGGCTGTTATGTAACAAACCAATAAATCAACTTTATATATACTATGAGATTTGTATCA 1841
Query 1796 TTTGTATGCTGGGAAGAGCATATTACTTTTTAATATTTATATATATAAATCTTATTGTCT 1855
||||||||||||||||||| ||||||||| ||| ||| | ||||||||||||||| |||
Sbjct 1842 TTTGTATGCTGGGAAGAGCTTATTACTTTA-AATTTTTTTTTATATAAATCTTATTATCT 1900
Query 1856 TC 1857
||
Sbjct 1901 TC 1902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91917197895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5