BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483049
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40095.1 | Symbols: | Alpha/beta hydrolase related protein ... 1397 0.0
> AT2G40095.1 | Symbols: | Alpha/beta hydrolase related protein
| chr2:16743023-16745144 FORWARD LENGTH=1217
Length=1217
Score = 1397 bits (756), Expect = 0.0
Identities = 900/967 (93%), Gaps = 19/967 (2%)
Strand=Plus/Plus
Query 19 ATGGGTTTTAGCAAAGAAGAGATTAGTAAAACCAGAAAGCTTTCGTCATCTCTATGGAGA 78
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 85 ATGGGTTTTAGCAAAGAAGAGATTAGTAAAACCAGAAAGCTTTGGTCATCTCTATGGAGA 144
Query 79 GGTATCAAAATTGTATTCGTTTTGTTCACAATGTTCCTCTCTTTTCTCCTCGTCTCTGCT 138
|| ||||||| | ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 145 GGAATCAAAACTATATTCGTTTTGTTCACAATGTTCTTCTCTTTTCTCCTTGTCTCTGCT 204
Query 139 CCAATCTTCCTCGCCGTCGCCGATGctctcctcccttcggctctcctccaccgcttctct 198
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 205 CCTATCTTCCTCGCCGTCGCCGATGCTCTCCTCCCTTCCGCTCTCCTCCACCGCTTCTCT 264
Query 199 tcgccggcgaatctctcttctcatctcACCAACTACGATTTCCGTCACTCTCTCATCGAT 258
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 265 TCGCCGGCGACTCTCTCTTCTCATCTCACCAACTACGATTTCCGTCACTCCCTCATCGAT 324
Query 259 ATTCCTTTAATCTCAATCATTAGATCCGCTGTTATACTCTGTGTTTATGGACTCTGTGAT 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ATTCCTTTAATCTCAATCATTAGATCCGCTGTTATACTCTGTGTTTATGGACTCTGTGAC 384
Query 319 GGACCAAAACTATCTAGAGGACCGTATCTGACAGTCACCATGATTTGCTCAGTTTCGTCT 378
|||||||||||||| |||||||||||||||||| | || |||||||| ||| | || |||
Sbjct 385 GGACCAAAACTATCGAGAGGACCGTATCTGACAATAACAATGATTTGTTCAATATCTTCT 444
Query 379 CTAGTCTACGTTTCGTTAAAAGCTGCGTTTGTGTTCGGCGAGCC-GTCCATCGGAGACGG 437
||| |||||||||||||||||||||||||||||||||| ||||| | | |||||||||||
Sbjct 445 CTAATCTACGTTTCGTTAAAAGCTGCGTTTGTGTTCGGTGAGCCAG-CGATCGGAGACGG 503
Query 438 CGGAGGAAACTACTTCAGAGCGGCGGAAGTGGCTCTGTTTCTCTGCTCGTCAGTCTTAGC 497
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 504 AGGAGGAAACTACTTCAGAGCGGCGGAAGTGGCTCTGTTTCTATGCTCGTCAGTCTTAGC 563
Query 498 CATAGGTCACATCATTGTGGCGTATCGAACAAGTTGTAGAGAAAGAAAAAAGCTTCTCGT 557
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 564 CATAGGTCACATCGTTGTGGCTTATCGAACAAGTTGTAGAGAAAGAAAAAAGCTTCTCGT 623
Query 558 CTTCAAAATCGACATTGAAGCCGTTTCGGCTTGTAAAAACGTTTACCCGAGATACCAAAA 617
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 624 CTTCAAAATCGACATTGAAGCCGTTTCGGCTTGTAAAAACGTGTACCCGAGATACCAAAA 683
Query 618 GAT-TC-T-ACAACAAGAGAGACTCAAATAGAGACGTATTTTCAAGAGAATCAATACTTA 674
||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 684 GATCTTATTACAACAAGAGAGACTCAAATAGAGACGTATTTCCAAGAGAATCAATACTTG 743
Query 675 TAAATATGTACACATACCTCAACATGTAAATATAA--AA-ATA------CA-ACG---TA 721
||||||| |||||||||||||||||||||||| || || ||| || ||| ||
Sbjct 744 TAAATATATACACATACCTCAACATGTAAATAAAACTAATATATAAAAACATACGGCGTA 803
Query 722 TAAATGTAGCTTCTTCTTCTGCCTTTCGGTGTTGACCCATCAACTCCTTCGCTTTTAAGT 781
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 804 TAAATGTAACTTCTCCTTCTGCCTTTCGGCGTTGACCCATCAACTCCTTCGCTTTTAAGT 863
Query 782 TTCAGAAGGATCCAAAGCGAAAGGAATGAAGATTAATTATATAACCTATGCTTTTTTAAA 841
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 864 TTCAGAAGGATCCAAAGCAAAAGGAATGGAGATTAATTATATAACCTATGCTTTTTTAAA 923
Query 842 ATGAGACAACTCAGATCAACTGGCAGATATTAGCTTTAACATTAGATTAGTAAGGGCGAT 901
||||||| |||||| ||||||||| | ||||||||||||||| |||||| ||||||||
Sbjct 924 -TGAGACATTTCAGATGAACTGGCAGTTGTTAGCTTTAACATTATATTAGTTAGGGCGAT 982
Query 902 TTGTGAATAATCCAGAGTTCATTAATGAGAAAAGAAGCCCAAGGCTGTCTCTCCATTTTG 961
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 983 TTGTAAATAATCCAGAGTTCCTCAATGAGAAAAGAAGCCCAAGGCTGTCTCTCCGTTTTG 1042
Query 962 tatatat 968
|||||||
Sbjct 1043 TATATAT 1049
Score = 121 bits (65), Expect = 2e-26
Identities = 96/109 (88%), Gaps = 9/109 (8%)
Strand=Plus/Plus
Query 979 TAAGCATAAGCACATAGTATGCTGTATGTCATATGTCCGCGTGAATGTCTTTATACGTCA 1038
||||||||||||||||||| || || ||| ||||||||| || |||||||||||||
Sbjct 1104 TAAGCATAAGCACATAGTA---TG--TG--ATACGTCCGCGTGGATTTCTTTATACGTCA 1156
Query 1039 CCAAATAT-TCTAAAAGAATCGTAAAGCAACCTTTTTACGATCATTATC 1086
||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1157 CCAAA-ATCTCTAATAGAATCGTAAAGCAACCTTTTTACGATCATTATC 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5