BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483053
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40113.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1140 0.0
> AT2G40113.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr2:16750035-16751084 FORWARD LENGTH=907
Length=907
Score = 1140 bits (617), Expect = 0.0
Identities = 808/892 (91%), Gaps = 45/892 (5%)
Strand=Plus/Plus
Query 1 GACCAAACCCACAAAAGTCAGTTGATCAGTCTTCTCTGTGATGGTAGGCTAGTTTCTTCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GACCAAACCCACAAAAGTCAGTTGATCAGTCTTCTCTGTGATGGTAGGCTTGTTTCTTCA 60
Query 61 TTTCCTGCTAACTACTACACTTTTCCCCAAAGTGTAGTTAGCTGAGATAACACATTGAGA 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTCTGCTAACTACTACACTTTTCCCCAAAGTGTAGTTAGCTGAGATAACACATTGAGG 120
Query 121 TTAAAACAAATAACAGGCGAATGGAGTTGGACAAGTTGACTATTTGCTCTCCTTAAATCC 180
| |||||||||| | |||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 121 TCCAAACAAATAATAAGCGAATGGAGTTGGACAAATTGACAATTTTCTCTCCTTAAATCC 180
Query 181 ATCCTCTTCACACACATCATTCTTAAAGAAAAGTGACATATATTGAGACATGGAGAGCTT 240
|||||||||||||||||||||||| | || |||||||||| |||||||||||
Sbjct 181 ATCCTCTTCACACACATCATTCTT-------A---ACCTATATTGAGATATGGAGAGCTT 230
Query 241 CTTTATCCTCCGTTGCTTCTTGTTACTCTCCTTCTTCTTCTTCAACGGAGCATTCACAGC 300
||||||| ||||||||||||||||| | | ||||||||||||||||||||||| ||||
Sbjct 231 CTTTATCATCCGTTGCTTCTTGTTA-T-T-ATTCTTCTTCTTCAACGGAGCATTTGCAGC 287
Query 301 TTCAAGCAAGTTATGGAGCATAAGGGAGATGTCGGATATGGCTGGCTATGGCGAACACAA 360
|||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 288 TTCAAGTAAGTTATGGAGCATAAGAGAGATGTCGGATATGGCTGGCTACGGGGAACACAA 347
Query 361 ACTCTCATCCGTAGTTATCACCGGGTCTCTTCTTTGCAACACCCCTATTTCAGGTGCAAC 420
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 348 ACTCTCATCCGTAGTTATCACCGGTTCTCTTCTTTGCAACACCCCTGTTTCAGGTGCAAC 407
Query 421 TGTTGCCATTAAGTGTCACACTGGATTCCAAA-AGAGATCAAAATGGATAAAAG-GTGTT 478
||||||||| ||||||||||||||| | ||| |||||||||||||||| |||| |||||
Sbjct 408 TGTTGCCATCAAGTGTCACACTGGACT-AAAACAGAGATCAAAATGGAT-AAAGAGTGTT 465
Query 479 ACTAATGACTTTGGAGAGTTTGTCATCCATCTTCCTTCTCATCTTCACGCAATTCCGCAA 538
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ACTAATGACTTTGGAGAATTTGTCATCCATCTTCCTTCTCATCTTCACGCAATTCCGCAA 525
Query 539 CTCGAAAAAGCATGTTTCATCAAACCAATACATGTTCCTAAGCACTATCACAAATGTTAT 598
|||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||
Sbjct 526 CTCGAAAAAGCATGTTTCGTCAAACCAATACATGTGCCTAAGCACTATCACAGATGTTAC 585
Query 599 CACACTTTTTCCAAATCCAATATACACAAAGGCATCAAACTTGTTTCCTCCAGAAATGGC 658
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 586 CACACTTTTTCCAAATCCAATATACACAAAGACATCAAACTTGTTTCCTCGAGAAATGGC 645
Query 659 TTCCGTGTCTACACCTCAGGGACTATCAAGTTACATGGAGGACACAGTTCAAGAACATCC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TTCCGTGTCTACACCTCAGGGACTATCAAGTTACATGGAGGACACAGTTCAAGAACATCC 705
Query 719 CAACAACCTCATAAAGCCAACATGTAAAC-----T-----------CAA----GA-C--T 755
|||| | ||||||||||||||||||||| | ||| || | |
Sbjct 706 CAAC--C-TCATAAAGCCAACATGTAAACACAAGTTTAAAGAAAAACAAAACAGAACACT 762
Query 756 TGAAGATTCATCTTGTGTTATTGTGTTTCTCTCACTTTGTTTAGGTTGGCGCTTCAGTCA 815
||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 763 TGAAGATTCATCTTGTGTTTTTGTGTTCCTCTCACTT-GTTTAGGTTGGCGCTTCAGTCA 821
Query 816 CATAACCGAGTTGAGTCTCTTTACATTGTTTATCAGTTTCACACAGTGTAAT 867
| |||||||||||||||||| |||||||| ||| |||||| ||||||||||
Sbjct 822 CCGAACCGAGTTGAGTCTCTTCACATTGTT-ATCGGTTTCAAACAGTGTAAT 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5