BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483055
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40120.1 | Symbols: | Protein kinase superfamily protein | ... 2383 0.0
AT4G03175.1 | Symbols: | Protein kinase superfamily protein | ... 682 0.0
AT1G06630.1 | Symbols: | F-box/RNI-like superfamily protein | ... 91.6 3e-17
> AT2G40120.1 | Symbols: | Protein kinase superfamily protein
| chr2:16754939-16757592 REVERSE LENGTH=2245
Length=2245
Score = 2383 bits (1290), Expect = 0.0
Identities = 1500/1596 (94%), Gaps = 36/1596 (2%)
Strand=Plus/Plus
Query 614 ATCAT-TATCTGATGGACAGTCTCAATTTGGGACAGCTCGGACATATCCAGAGTGGAGCG 672
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 637 ATCATCT-TCTGATGGACAGTCTCAATTTGGGACAGCTAGGACATATCCAGAGTGGAGCG 695
Query 673 AGTTTTACTTGCATAATGAGACTGAAGATGAAGATGAGTTTATGTCTCCTGCATTTAGAG 732
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AGTTTTACTTGCACAATGAGACTGAAGATGAAGATGAGTTTATGTCTCCTGCATTTAGAG 755
Query 733 AATCTGATTTCTTTATTTTACCTGAAAATGCTCAGGATAAGTTCATCACAGATAACCAAT 792
||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 756 AATCTGATTGCTTCATTTTACCTGAAAATGCAGAGGATAAGTTTATCACAGATAACCAAT 815
Query 793 TCGAGAACAT-GCTTGGTGTTTATGATAAATCATCATCTCAAGGGTCTCAAACCGAAGCG 851
||||||| | ||||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 816 TCGAGAA-TTCGCTTGGTGTCTATGATAGATCATCATCTCAAGGGTCTCTAACCGAAGCG 874
Query 852 AGTCTCGATTACTTAGATAAGCCGTTTCTTCTCGACATTGGTCTTGATGATAAAACTGAT 911
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 875 AGTCTCGATTACTTAGATAAGCCCTTTCTTCTTGACATTGGTCTTGAGGATAAAACTGAT 934
Query 912 GAGCTTGATCTCAAGACCGGTGATCAGGTGAATGTAACAGATGAAGAGGTTGATGTTGTT 971
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 935 GAGCTTGATCTCAAGACTGGTGATCAGTTGAATGTAACAGATGAAGAGGTTGATGTTGTT 994
Query 972 CATGAGGTTGAAGATGAATATGAAGTATTTAATCTTAGAATCATTCACTGGAAAAACAGG 1031
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 995 CATGAGGTTGAAGATGAATATGAAGTGTTTAATCTTAGAATCATTCACTGGAAAAACAGG 1054
Query 1032 ACGGGATTCGAAGAGAACAAGGATCTACCAATTGTGATAAACTCGGTGATTGGAGGAAGA 1091
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1055 ACGGGATTCGAAGAGAACAAGGATCTACCAATTGTGATAAACACTGTGATTGGAGGAAGA 1114
Query 1092 TACTACATAACGGAATACATTGGTTCTGCTGCATTTAGCAAGGTGGTTCAGGCACATGAT 1151
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1115 TATTACATTACGGAATACATTGGTTCTGCTGCATTTAGCAAGGTGGTTCAGGCACAGGAT 1174
Query 1152 CTACACAATGGGGTCGATGTTTGCCTCAAGATTATCAAGAACGATAAAGATTTCTTCGAT 1211
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1175 CTACACAACGGGGTTGATGTTTGCCTCAAGATTATTAAGAACGATAAAGATTTCTTTGAT 1234
Query 1212 CAGAGTTTAGACGAGATCAAGCTATTGAAACATGTCAATAAGCATGATCCTACTGATGAA 1271
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1235 CAGAGTTTAGATGAGATCAAGCTATTGAAACATGTCAATAAGCATGATCCTGCTGATGAA 1294
Query 1272 CATCACATCCTGCGCCTCTACGATTACTTCTACCATCAAGAACATTTGTTTATTGTCTGT 1331
||||| ||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1295 CATCATATCTTGCGCCTCTATGATTACTTCTACCACCAAGAACATTTGTTTATCGTCTGT 1354
Query 1332 GAACTTCTCCGAGCAAACTTGTATGAATTCCAGAAATTCAATCAAGAATCAGGAGGAGAA 1391
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1355 GAACTTCTCCGAGCAAACTTGTATGAGTTTCAGAAATTCAACCAAGAATCAGGAGGAGAA 1414
Query 1392 CCATACTTTAACTTAAGCAGACTTCAGGTTATAACCCGTCAGTGTTTGGATGCGCTTGTG 1451
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1415 CCATACTTTAACTTAAGCAGACTTCAGGTTATAACACGTCAGTGTTTGGATGCTCTTGTG 1474
Query 1452 TTCCTTCATGGACTAGGAATCATACATTGTGATCTTAAACCTGAGAATATACTGATAAAG 1511
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1475 TTCCTTCATGGACTAGGAATCATACATTGTGATCTCAAACCTGAGAATATACTGATAAAG 1534
Query 1512 AGTTACAAAAGATGTGCGGTGAAAATCATCGATCTTGGAAGTAGTTGTTTCCGCTCTGAC 1571
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1535 AGTTACAAAAGATGCGCGGTAAAAATCATCGATCTTGGAAGTAGTTGTTTCCGCTCTGAT 1594
Query 1572 AACTTGTGCTTGTATGTACAATCTCGTTCTTATAGAGCTCCTGAAGTGATTCTCGGGCTT 1631
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1595 AACTTGTGCTTGTATGTACAATCTCGTTCCTATAGAGCTCCTGAAGTGATTCTCGGGCTT 1654
Query 1632 CCATATGATGAAAAGATTGATTTGTGGTCTCTTGGGTGTATTTTAGCAGAGCTCTGCTCT 1691
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1655 CCATATGACGAAAAGATCGATTTGTGGTCTCTTGGGTGTATTTTAGCAGAACTCTGCTCT 1714
Query 1692 GGTGAGGTTCTGTTTCCAAATGAAGCAGTAGCGATGATATTGGCTCGGATTGTTGCAGTT 1751
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1715 GGTGAGGTTCTGTTTCCAAACGAAGCAGTAGCGATGATATTGGCTAGGATTGTTGCAGTT 1774
Query 1752 TTAGGTCCTATAGAAACAGAGATGCTAGAGAAAGGTCAAGAGACACATAAATACTTCACT 1811
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1775 TTAGGTCCTATAGAAACAGAGATGCTAGAGAAAGGTCAGGAGACACATAAATACTTCACC 1834
Query 1812 AAAGAGTATGATCTCTACCACTTAAACGAGGAGAGCAATGAGATTGAATACATAATCACA 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AAAGAGTATGATCTCTACCACTTAAACGAGGAGAGCAATGAGATTGAATACATAATCACA 1894
Query 1872 GAAGAATCATGCTTGGAAGAACAATTACATGTTAGTGATGAATTGTTCTTAGATTTTGTA 1931
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1895 GAAGAATCAAGCTTGGAAGAACAATTACAAGTTAGTGATGAATTGTTCTTAGATTTTGTA 1954
Query 1932 AGGAGTCTACTTGAGATCAATCCATTGAGACGTCCAACAGCTCTCGAGGCACTTAACCAC 1991
|||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1955 AGGACTCTACTTGATATCAATCCTTTGAGACGTCCAACAGCTCTAGAGGCACTTAACCAC 2014
Query 1992 CCTTGGCTCTCTTCTTCTTC-T-T-ACAATTGAttttgcttgttcttgtgttggttgttt 2048
|||||||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||
Sbjct 2015 CCTTGGCTCTCTTCTTCTTCATCTTACAATTGATTTTGCTTCTTCTTTTGTTGGTTGTTT 2074
Query 2049 agttttgtcttattctttgtttctccagttttttg-------gga-tcttg-tt-tg-t- 2096
||||||||||||||||||||||||||||||||| ||| ||||| || || |
Sbjct 2075 GGTTTTGTCTTATTCTTTGTTTCTCCAGTTTTTTTCCCTCTTGGAATCTTGCTTGTGATT 2134
Query 2097 ---g-att-ttt----g-t--aattgtGAGATTA-T--GTGTATAGAACGGTTT--ACAT 2139
| ||| ||| | | ||||||||||||| | |||||||||||||||| ||||
Sbjct 2135 TTTGTATTGTTTAATCGCTGTAATTGTGAGATTAATATGTGTATAGAACGGTTTTTACAT 2194
Query 2140 TGATTTCACATTGTAAGTAAAAAGCTTGTGTGGTGC 2175
||||||||||||||||||||||||||||||||||||
Sbjct 2195 TGATTTCACATTGTAAGTAAAAAGCTTGTGTGGTGC 2230
Score = 534 bits (289), Expect = 1e-150
Identities = 435/498 (87%), Gaps = 39/498 (8%)
Strand=Plus/Plus
Query 1 AAACCTTCAGAGAGAAAATTTCCCCCaaaaaaaaaaaaCCGGTAAGACAAGACATCGCAC 60
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1 AAACCTTCAGAGAGAAAATTT-CCCC-----AAAAAAACCGGTAAGACAAGACATCGCAC 54
Query 61 CA--T--G--TCCGTTATTGTTAACTTTGGTCCTACAGAGCCTATACagagtag---aag 111
|| | | |||||||| ||||||||||||||||||||||| | ||||||||| |||
Sbjct 55 CATGTCCGTATCCGTTATAGTTAACTTTGGTCCTACAGAGCCAACACAGAGTAGAACAAG 114
Query 112 aagactcagatgaagaagaagaag-aataaagatcagagatttagattaaatcatcagaG 170
||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 115 TAGACTCAGATGAAGAAGAAGAAGAAAGAAAGATCACAGATTTAGATTCAATCATCAGAG 174
Query 171 CATGCGAGACTTTAAGAAGCTTATCATCAATACC-AACAATGGGTTTTAGTTTTTTGACT 229
|||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 175 CATGCGTGACTTTAACAAGCTTATCATCAATACCAAACAATGGGTTTTAGTTTCTTGACT 234
Query 230 CGATTCTCAATCACGTGATTCCAAGTTTGAAACTTTCCT-TGT-TCTGA-AACTCT-C-T 284
||||||||||||||||||||| ||||||||||||||||| | | ||| | |||| | |
Sbjct 235 CGATTCTCAATCACGTGATTCAAAGTTTGAAACTTTCCTCT-TCTCTTATCTCTCTCCGT 293
Query 285 -C---G---TG--A----CAC-TGACAGTGGTGGTTGGTCAATGGCGGTTGATGTGAAAT 330
| | || | | | ||||||||||||||||||||||||||||||||| ||||
Sbjct 294 GCTTTGTTCTGAAACTCTCTCGTGACAGTGGTGGTTGGTCAATGGCGGTTGATGTTAAAT 353
Query 331 CTGTGCTTGAGTTTCTCCGGA-GGAATGGTTTAACGGAGGCGGAATCTGCTCTGAGAGAC 389
|||| ||||||||||| | || ||||||||||||||||||||||||||||||| ||||||
Sbjct 354 CTGTTCTTGAGTTTCTTC-GACGGAATGGTTTAACGGAGGCGGAATCTGCTCTTAGAGAC 412
Query 390 GATATTAACGAGAAAAACAAACTCGCTTCTTTCGATTTCGAGAAGTTTCTGTTCCCGATT 449
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GATATCAACGAGAAAAACAAACTCGCTTCTTTCGATTTCGAGAAGTTTCTGTTCCCGATT 472
Query 450 CCGCCACCGATCAGAATC 467
|| | ||||||| ||||
Sbjct 473 CCTACGCCGATCAAAATC 490
> AT4G03175.1 | Symbols: | Protein kinase superfamily protein
| chr4:1402187-1402864 REVERSE LENGTH=420
Length=420
Score = 682 bits (369), Expect = 0.0
Identities = 399/414 (96%), Gaps = 0/414 (0%)
Strand=Plus/Plus
Query 1608 GCTCCTGAAGTGATTCTCGGGCTTCCATATGATGAAAAGATTGATTTGTGGTCTCTTGGG 1667
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 7 GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAAGATCGATTTGTGGTCTCTTGGG 66
Query 1668 TGTATTTTAGCAGAGCTCTGCTCTGGTGAGGTTCTGTTTCCAAATGAAGCAGTAGCGATG 1727
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 67 TGTATTGTAGCAGAACTCTGCTCTGGTGAGGTTCTGTTTCCAAACGAAGCAGTAGCGATG 126
Query 1728 ATATTGGCTCGGATTGTTGCAGTTTTAGGTCCTATAGAAACAGAGATGCTAGAGAAAGGT 1787
||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 127 ATATTGGCTAGGATTGTTGCAGTTTTAGGTCCTATCGAAACAGAGATGCTAAAGAAAGGT 186
Query 1788 CAAGAGACACATAAATACTTCACTAAAGAGTATGATCTCTACCACTTAAACGAGGAGAGC 1847
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 187 CAAGAGACACATAAATACTTCACCAAAGAGTATGATCTCTACCACTTAAACGAGGAGAGC 246
Query 1848 AATGAGATTGAATACATAATCACAGAAGAATCATGCTTGGAAGAACAATTACATGTTAGT 1907
||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 247 AATGAGATTGAATACATAATCACAGAAGAATCAAGCTTGGAAGAACAACTACAAGTTAGT 306
Query 1908 GATGAATTGTTCTTAGATTTTGTAAGGAGTCTACTTGAGATCAATCCATTGAGACGTCCA 1967
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 307 GATGAATTGTTCTTAGATTTTGTAAGGACTCTACTTGAGATCAATCCTTTGAGACGTCCA 366
Query 1968 ACAGCTCTCGAGGCACTTAACCACCCTTGGCTCTCTTCTTCTTCTTACAATTGA 2021
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 ACAGCTCTCGAGGCACTTAACCACCCTTGGCTCTCTTCTTCTTCTTACAACTGA 420
> AT1G06630.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:2027739-2031388 FORWARD LENGTH=1745
Length=1745
Score = 91.6 bits (49), Expect = 3e-17
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 401 GAAAAACAAACTCGCTTCTTTCGATTTCGAGAAGTTTCTGTTCCCGATTCCGCCACCGAT 460
|||||||||||||| |||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 1266 GAAAAACAAACTCGGTTCTTTTGATTTCGAGAAGTTTCTGTTCCCGATTCCTCCGCCAAT 1325
Query 461 CAGAATC 467
|| ||||
Sbjct 1326 CAAAATC 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107880971205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5