BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483061
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40150.1 | Symbols: TBL28 | TRICHOME BIREFRINGENCE-LIKE 28 |... 1962 0.0
AT3G55990.1 | Symbols: ESK1, TBL29 | Plant protein of unknown f... 819 0.0
> AT2G40150.1 | Symbols: TBL28 | TRICHOME BIREFRINGENCE-LIKE 28
| chr2:16775442-16777243 FORWARD LENGTH=1446
Length=1446
Score = 1962 bits (1062), Expect = 0.0
Identities = 1240/1323 (94%), Gaps = 23/1323 (2%)
Strand=Plus/Plus
Query 450 ATGAAGCAGAGAAAGAAGAGTAATCTCTCAATCTTCGTAATCGTCTTCTCTCTTTTCCTC 509
|||||||| |||||||||||| |||||||||||||||| ||| |||||||||||||| ||
Sbjct 118 ATGAAGCAAAGAAAGAAGAGTTATCTCTCAATCTTCGTGATCTTCTTCTCTCTTTTCTTC 177
Query 510 TTGGGGATCTTCATGTACAATGACAACCTCAAATCCTCCATTGCTGATTTCACATCTTCG 569
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 TTCGGGATCTTCATGTACAATGACAACCTCAAATCCTCCATTGCTGACTTCACATCTTCG 237
Query 570 AACCCATTCTCTAGTTCATCTGTGGAGTTGCCGCCGGAGGAGTGTGATCTCTTCACCGGT 629
||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 238 AACCCATTCTCTAGTTCATTTGTGGAGTTGCCGCCGGATGAGTGTGATCTGTTCACCGGT 297
Query 630 CAATGGGTTTTCGACAACAAGACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTG 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CAATGGGTTTTCGACAACAAGACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTG 357
Query 690 ACGGAGCAAGTGACTTGCTTAAGAAACGGAAGGAAAGATTCTCTGTTTCAGAATTGGAGA 749
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 358 ACGGAGCAAGTGACTTGTTTAAGAAACGGAAGGAAAGATTCTTTGTTTCAGAATTGGAGA 417
Query 750 TGGCAACCTAGAGACTGTTCTTTACCAAAATTCAAAGCGAGGGTGTTGCTAGAGAAGCTG 809
||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||
Sbjct 418 TGGCAACCTAGAGACTGTTCTTTACCAAAATTCAATGCAAGAGTGTTGTTAGAGAAGCTG 477
Query 810 AGGAACAAGAGATTGATGTTTGTTGGTGACTCGTTAAACCGGAACCAATGGGAATCAATG 869
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 AGGAACAAGAGATTGATGTTTGTCGGTGACTCGTTAAACCGGAACCAATGGGAATCAATG 537
Query 870 GTTTGTTTGGTTCAATCAGCGATTCCTCCCGGTAGAAAGAGCTTAAACCAGACCGGTTCT 929
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 538 GTTTGTTTGGTTCAATCAGTGATTCCTCCCGGTAGAAAAAGCTTAAACCAGACCGGTTCA 597
Query 930 CTCACTGTTTTCAAAATTCAGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTT 989
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCACTGTTTTCAAAATCCAGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTT 657
Query 990 TTGGTAGAATCAAATTCAGACGATCCGAGAAA-GCACAGTATAATCGACCGTATAATAAT 1048
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 658 TTGGTGGAATCAAATTCAGACGATCCG-GAAAAGCACAGTATAATCGACCGTATAATAAT 716
Query 1049 GCCAGAGTCTATCGAGAAACATGGAGTCAACTGGATAGGTGTTGACTTTCTTGTCTTCAA 1108
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 GCCAGAGTCCATCGAGAAGCATGGAGTCAACTGGATAGGCGTTGACTTTCTTGTCTTCAA 776
Query 1109 TAGTTACATCTGGTGGATGAACACTGTCTCCATCAAAGTTCTACGTGGATCGTTCGATGA 1168
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 777 TAGTTACATCTGGTGGATGAATACTGTCTCCATCAAAGTCCTACGTGGATCGTTCGATGA 836
Query 1169 TGGGGACACAGAGTATGATGAGATCAAACGGCCAATGGCGTACGAGAGGATGTTGAGGAC 1228
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 837 TGGGGACACAGAGTATGATGAGATCAAACGGCCAATAGCGTACGAGAGGGTGTTGAGGAC 896
Query 1229 ATTGGGAGATTGGGTGAACCATAACATTGATCCTCTAAGTACAACTGTTTTCTTCATGAG 1288
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTGGGAGATTGGGTGGACCATAACATTGATCCTCTAAGTACAACTGTTTTCTTCATGAG 956
Query 1289 CATGTCTCCTCTTCACATCAAGAGCTTAGATTGGGATAATCCAGAGGGTATAATGTGTGC 1348
|||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||
Sbjct 957 CATGTCTCCTCTTCACATCAAGAGCTCAGATTGGGCTAATCCTGAGGGTATAAGGTGTGC 1016
Query 1349 TTTAGAGACAACACCAATCTTAAACATGTCTTTCAACGTGGGGACGAACTATAGGCTGTT 1408
||||||||||||||| ||||| ||||||||||||||||||| | || ||| |||
Sbjct 1017 TTTAGAGACAACACCGATCTTGAACATGTCTTTCAACGTGG---CTTACG---GGCAGTT 1070
Query 1409 TTCCGCGGTGGGAACGGACTATAGGCTGTTTTCGGTGGTGGAAAACGTTACGCAGTCTCT 1468
|||||||||||| ||||| || ||||||||| |||||| |||||||||||| ||||||||
Sbjct 1071 TTCCGCGGTGGGGACGGATTACAGGCTGTTTCCGGTGGCGGAAAACGTTACACAGTCTCT 1130
Query 1469 CAAAGTTCCTATTCATTTCCTCAACATCACTGCATTGTCTGAGTATCGTAAAGATGCACA 1528
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1131 AAAAGTTCCTATTCATTTCCTCAACATTACTGCATTGTCTGAGTATCGTAAAGATGCACA 1190
Query 1529 TACTTCAGTTTACACGATCAAGCAAGGCAAATTGCTGACTCGGGAGCAACAAG-CTGATC 1587
|||||| ||||||||||||||||||||||| |||||||| |||||||| ||| | ||||
Sbjct 1191 TACTTCGGTTTACACGATCAAGCAAGGCAAGTTGCTGACGCGGGAGCAGCAAAAC-GATC 1249
Query 1588 CGGCCAATTTTGCTGATTGCATACACTGGTGCTTACCAGGCCTTCCTGATACTTGGAATG 1647
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1250 CAGCCAATTTTGCTGATTGCATACACTGGTGCTTACCAGGCCTTCCTGATACATGGAATG 1309
Query 1648 AGTTTCTCTATACACATATTATTTCTCAAAGATGAAATTATTTGGATTCTTTCCTCCCtt 1707
||||||||||||||||||||||||||| ||||||| | |||||||| ||| |
Sbjct 1310 AGTTTCTCTATACACATATTATTTCTCGAAGATGA--------G-ATTCTTTCATCC-TC 1359
Query 1708 ttttttGGTTTTaaaaaaaTTCTTGTGATGTATATAGGAC-GAAGATTTAAGGGATTTAA 1766
||||||||||| |||||||||||||||||||||||||||| || |||| ||||||||| |
Sbjct 1360 TTTTTTGGTTT-AAAAAAATTCTTGTGATGTATATAGGACAGA-GATTCAAGGGATTTGA 1417
Query 1767 AGT 1769
|||
Sbjct 1418 AGT 1420
Score = 669 bits (362), Expect = 0.0
Identities = 422/451 (94%), Gaps = 4/451 (1%)
Strand=Plus/Plus
Query 1 TCTCTCCGACCCACATGCCGACACTTTACATAACTGTTGACCAAGTTCCTCTTCTTTCTT 60
|||||| || |||||||||||||| |||||||||||||||||||| | ||| |||| |||
Sbjct 2 TCTCTCTGAGCCACATGCCGACAC-TTACATAACTGTTGACCAAG-T-CTC-TCTTCCTT 57
Query 61 CTTTATCAGATCATGCAACCTTCAAGAACAAGAGTTCCATTTTTCGAAACAGGAGTGATC 120
|||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| || |
Sbjct 58 CTTTATCAAATCATGCAACCTTCAAGAACAAGAGTTTCATTTTTTGAAACAGGAGAGACC 117
Query 121 ATGAAGCAGAGAAAGAAGAGTAATCTCTCAATCTCCGTAATCGTCTTCTCTCTTTTCCTC 180
|||||||| |||||||||||| |||||||||||| ||| ||| |||||||||||||| ||
Sbjct 118 ATGAAGCAAAGAAAGAAGAGTTATCTCTCAATCTTCGTGATCTTCTTCTCTCTTTTCTTC 177
Query 181 TTGGGGATCTTCATGTACAATGACAACCTCAAATCCTCCATCGTTGACTTCACATATTCG 240
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 178 TTCGGGATCTTCATGTACAATGACAACCTCAAATCCTCCATTGCTGACTTCACATCTTCG 237
Query 241 AACCCATTCTCTAGTTCATTTGTGGAGTTGCCACCGGAGGAGTGTGATCTCTTCACCGGT 300
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 238 AACCCATTCTCTAGTTCATTTGTGGAGTTGCCGCCGGATGAGTGTGATCTGTTCACCGGT 297
Query 301 GAATGGGTTTTCGACAACAAGACACATCCATTGTATAAAGAGGAAGAGTGTGAGTTCTTG 360
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 298 CAATGGGTTTTCGACAACAAGACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTG 357
Query 361 ACGGAGCAAGTGACTTGCTTAAGAAACGGAAGGAAAGATTCTTTGTTTCAGAATTGGAGA 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGGAGCAAGTGACTTGTTTAAGAAACGGAAGGAAAGATTCTTTGTTTCAGAATTGGAGA 417
Query 421 TGGCAACCTAGAGACTGTTCTTTACCAAAAT 451
|||||||||||||||||||||||||||||||
Sbjct 418 TGGCAACCTAGAGACTGTTCTTTACCAAAAT 448
> AT3G55990.1 | Symbols: ESK1, TBL29 | Plant protein of unknown
function (DUF828) | chr3:20780315-20783233 FORWARD LENGTH=1861
Length=1861
Score = 819 bits (443), Expect = 0.0
Identities = 891/1100 (81%), Gaps = 60/1100 (5%)
Strand=Plus/Plus
Query 591 GTGGAGTTGCCGCCGGAGGAGTGTGATCTCTTCACCGGTCAATGGGTTTTCGACAACAAG 650
||||| |||||||||||||| || ||| | |||||||| |||||||||| || ||| ||
Sbjct 492 GTGGAATTGCCGCCGGAGGAATGCGATTTGTTCACCGGAGAATGGGTTTTTGATAACGAG 551
Query 651 ACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTGACGGAGCAAGTGACTTGCTTA 710
|| |||||||||||||||| || | |||||||||||||||| |||||| |||||| |
Sbjct 552 ACGCATCCATTGTATAAAGAGGATCAATGTGAGTTCTTGACGGCGCAAGTCACTTGCATG 611
Query 711 AGAAACGGAAGGAA-AGATTCTCTGTTTCAGAATTGGAGATGGCAACCTAGAGACTGTTC 769
||||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 612 AGAAATGGAA-GAAGAGATTCTCTGTATCAGAACTGGAGATGGCAACCTAGAGATTGTTC 670
Query 770 TTTACCAAAATTCAAAGCGAGGGTGTTGCTAGAGAAGCTGAGGAACAAGAGATTGATGTT 829
||||||||| |||||||||| || || | |||||||| |||||||||||| |||||||
Sbjct 671 TTTACCAAAGTTCAAAGCGAAATTGCTGTTGGAGAAGCTAAGGAACAAGAGAATGATGTT 730
Query 830 TGTTGGTGACTCGTTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGC 889
||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CGTTGGAGATTCCCTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGT 790
Query 890 GATTCCTCCCGGTAGAAAGAGCTTAAACCAGACCGGTTCTCTCACTGTTTTCAAAATTC- 948
| ||||||||||| |||| ||||| ||| | |||||||||||| | || ||| | | |
Sbjct 791 GGTTCCTCCCGGTCGAAAAAGCTTGAACAAAACCGGTTCTCTCTCCGTCTTCCGAGT-CG 849
Query 949 AGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTTTTGGTAGAATCAAATTCAG 1008
|||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 850 AGGATTATAATGCGACGGTGGAGTTTTATTGGGCACCATTTTTGGTGGAATCGAATTCAG 909
Query 1009 ACGATCCGAGAA-A-GCACAGTATAATCGACCGTATAATAATGCCAGAGTCTATCGAGAA 1066
| ||||| | || | ||| |||||| | |||||||||||||||| ||||| || || ||
Sbjct 910 ATGATCC-A-AATATGCATAGTATACTTAACCGTATAATAATGCCTGAGTCCATTGA-AA 966
Query 1067 A-CATGGAGTCAACTGGATAGGTGTTGACTTTCTTGTCTTCAATAGTTACATCTGGTGGA 1125
| |||||||||||||||| ||| |||||||||||||| ||||| | |||||| |||||||
Sbjct 967 AGCATGGAGTCAACTGGAAAGGCGTTGACTTTCTTGTTTTCAACACTTACATTTGGTGGA 1026
Query 1126 TGAACAC-TGTCTCCATCAAAGTTCTACGTGGATCGTTCGATGATGGGGACACAGAGTAT 1184
||||||| | || | || ||||| ||||| |||||||||||| | || ||||| ||||||
Sbjct 1027 TGAACACAT-TCGCTATGAAAGTCCTACGAGGATCGTTCGATAAAGGAGACACCGAGTAT 1085
Query 1185 GATGAGATCAAACGGCCAATGGCGTAC-G-AGAGGATGTTGAGGACATTGGG-AGATTGG 1241
|| |||||| |||||||| | ||||| | |||| || ||||||| ||||| |||||||
Sbjct 1086 GAGGAGATCGAACGGCCAGTAGCGTATAGGAGAG--TGATGAGGAC-TTGGGGAGATTGG 1142
Query 1242 GTG-AACCATAACATTGATCCTCTAAGTACAACTGTTTTCTT--CATGAGCATGTCTCCT 1298
||| ||| | || |||||||||||| |||| ||||| ||||| | | ||||||||||||
Sbjct 1143 GTGGAACGA-AATATTGATCCTCTACGTACCACTGTCTTCTTTGC-T-AGCATGTCTCCT 1199
Query 1299 CTTCACATCAAGAGCTTAGATTGGGATAATCCAGA-GGGTAT-AATGTGTGCTTTAGAGA 1356
||||||||||||||||| |||||||| |||||||| ||| || || |||||| |||||||
Sbjct 1200 CTTCACATCAAGAGCTTGGATTGGGAGAATCCAGATGGG-ATCAA-GTGTGCATTAGAGA 1257
Query 1357 CAACACCAATCTTAAACATGTCTTTCAACGTGGGGACGAACTATAGGCTGTTTTCCGCGG 1416
| ||||||||| |||||||||| || || | | || | | |||
Sbjct 1258 CGACACCAATCCTAAACATGTC----AA--TG----C---C-AT----T-----CAGCG- 1293
Query 1417 TGGGAACGGACTATAGGCTGTTTTCGGTGGTGGAAAACGTTACGCAGTCTCTCAAAGTTC 1476
| ||||| ||||| || |||||||| || | ||||||||| ||||| ||||| || ||||
Sbjct 1294 TAGGAACAGACTACAGACTGTTTTCAGTAGCGGAAAACGTCACGCATTCTCTTAATGTTC 1353
Query 1477 CTATTCA-TTTCCTCAACATCACTGCATTGTCTGAGTATCGTAAAGATGCACATACTTCA 1535
| || | |||| ||||||| || | | || || || || |||||||| || |||||
Sbjct 1354 CGGTTTACTTTC-TCAACATTACCAAACTCTCCGAATACCGGAAAGATGCTCACACTTCG 1412
Query 1536 GTTTACACGATCA-AGCAAGGCAAATTGCTGACTCGGGAGCAACAAGCTGATCCGGCCAA 1594
||| |||| ||| | ||||||||| ||||||| | |||||||||||| ||||| ||
Sbjct 1413 GTTCACACAATCCGA-CAAGGCAAAATGCTGACGCCGGAGCAACAAGCCGATCCCAACAC 1471
Query 1595 TTTTGCTGATTGCATACACTGGTG-CTTACCAGGCCTT-CCTGATACTTGGAATGAGTTT 1652
|| || ||||| || || ||||| ||| || || || ||||| || |||||||||||
Sbjct 1472 TTACGCCGATTGTATCCATTGGTGTCTTCCC-GGT-TTACCTGACACGTGGAATGAGTTC 1529
Query 1653 CTCTATACACATATTATTTC 1672
|| || |||| ||| |||||
Sbjct 1530 CTTTACACACGTATCATTTC 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87499549935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5