BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483062
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40160.2 | Symbols: TBL30 | Plant protein of unknown functio... 1932 0.0
> AT2G40160.2 | Symbols: TBL30 | Plant protein of unknown function
(DUF828) | chr2:16777390-16779408 FORWARD LENGTH=1625
Length=1625
Score = 1932 bits (1046), Expect = 0.0
Identities = 1192/1264 (94%), Gaps = 4/1264 (0%)
Strand=Plus/Plus
Query 1 ATGAAACAAATC-GATGGCAGAGAAAGGAAAGCTTACCTTTCTCTGCTATACTTTGCCGT 59
||||| |||| | || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 59 ATGAAGCAAA-CTGACGGCAGAGAAAGGAAAGCTTACCTTTCTCTGCTATACTTTGCAGT 117
Query 60 CATTCTTCTACCCGTATTCCTTCTCGGATGCTATCTTTACAACGAGAAGCAGCTGAGGAT 119
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 118 CATTCTTCTTCCCGTATTCCTTCTCGGATGCTATCTGTACAACGAGAAGCAGCTGAGGGT 177
Query 120 TGGCCAGTTTCAGGAATTCAAGACACATAACCTGCAAGAACACATCAGTCCACCACAACA 179
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 178 TGGCCAGTTTCAGGAATTCAATACACATAACCTGCAAGAACACATCACTCCACTACAACA 237
Query 180 AAGCAAAGAAGATAAAGACAAGAAGACTGATGTTGTTCCATTAGAAGCCTGCGATGTTTT 239
||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 238 AAGCAAAGAAGATAAAGACAAGAAGACTGATCTTGTTCCATTAGAATTCTGTGATGTTTT 297
Query 240 CACAGGAAAATGGGTTCTTGATAACATCACACATCCTTTATACAAAGAAGATGAATGTGA 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 CACAGGAAAATGGGTTCTTGATAACGTCACACATCCTTTATACAAAGAAGATGAATGTGA 357
Query 300 GTTTCTCTCAGAGTGGGTGGCATGTACGAGAAACGGGAGACCAGACTCTAAGTACCAGAA 359
|||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 358 GTTTCTATCAGAGTGGGTGGCTTGTACAAGAAACGGGAGGCCAGACTCTAAGTACCAGAA 417
Query 360 ATGGAGATGGCAACCTCGAGATTGCTCTTTGCCAAGGTTCGACGGAAAGCTGCTGCTAGA 419
||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 418 ATGGAGATGGCAACCTCAAGATTGCTCTTTGCCAAGGTTCGACAGTAAGCTGCTGCTAGA 477
Query 420 GAAACTCAGGGGAAAGAAACTGATGTTCGTTGGTGATTCAATACATTACAATCAGTGGCA 479
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 478 GAAACTCAGGGGAAAGAAACTAATGTTCATTGGTGATTCAATACATTACAATCAGTGGCA 537
Query 480 ATCCATGGTTTGTATGGTCCAATCCTTGATTCACTCAGGCAAAAAGACCTTAAAACACAC 539
|||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||
Sbjct 538 ATCCATGGTTTGTATGGTTCAATCCGTGATTCCCTCAGGCAAAAAGACCTTAAAACACAC 597
Query 540 AGCACAAATGTCAATCTTCAACACAGAGGAGTACAACGCAACCATAGCATTTTACTGGGC 599
|||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||||||
Sbjct 598 AGCACAAATGTCCATCTTCAACATAGAGGAGTACAATGCAACCATATCATTTTACTGGGC 657
Query 600 ACCTTTCTTAGTAGAATCAAACACTGATCCTCCAGACAAGAGAGACGGGAAGACCGATCC 659
||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 658 ACCTTTCCTAGTCGAATCAAATGCTGATCCTCCAGACAAGAGAGACGGGAAGACCGATCC 717
Query 660 AGTAATCATACCGCAA-TCAATCTCGAAACACGGCGAGAACTGGAAAGACGCAGACTACC 718
||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTAATCATTCC-TAATTCAATCTCGAAACACGGCGAGAACTGGAAAGACGCAGACTACC 776
Query 719 TTGTATTCAACACCTACATATGGTGGACCAGACATTCCAAGATCAAAGTTCTAAAACAAG 778
| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 777 TCATATTCAACACCTACATATGGTGGACTAGACATTCCACGATCAAAGTTCTAAAACAAG 836
Query 779 AATCTTTCAACAAAGGTGACTCAAAAGACTACGATGAAATCGGAATCTATATCGTATACA 838
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 837 AATCTTTCAACAAAGGAGACTCAAAAGAGTACAATGAAATCGGAATCTATATAGTATACA 896
Query 839 AACAAGTGTTATCAACATGGACAAACTGGCTAGAACAAAACATAAACCCAAATCAAACAT 898
||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 897 AACAAGTGTTATCAACATGGACAAAATGGCTAGAACAAAACATCAACCCAAGTCAAACAT 956
Query 899 CAATCTTCTTCAGCAGCATGTCACCAACTCATATCAGAAGCTCAGATTGGGGATTCAATG 958
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 957 CTATCTTCTTCAGCAGCATGTCACCAACTCATATCAGAAGTTCAGATTGGGGATTCAATG 1016
Query 959 AAGGAAACAAGTGCGAAAAAGAGACAGAACCAATACTAAATATGTCAAGACCAATAGATG 1018
|||||| ||| || |||||||||||||||||||||||||| ||||||| ||||||| |||
Sbjct 1017 AAGGAAGCAAATGTGAAAAAGAGACAGAACCAATACTAAACATGTCAAAACCAATAAATG 1076
Query 1019 TTGGAACAAATCGAAGACTTTACGAAATCGCAGTGAATGTAACGAAATCAACAAAAGTGC 1078
|||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||
Sbjct 1077 TTGGAACAAATCGAAGACTTTACGAAATCGCACTGAATGCGACCAAATCTACAAAAGTGC 1136
Query 1079 CGATACATTTCCTCAACATAACGACAATGTCAGAGTATAGAAAAGATGGGCATACCTCAT 1138
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1137 CGATTCATTTCCTCAACATAACGACTATGTCAGAGTATAGAAAAGATGGGCATACCTCAT 1196
Query 1139 TTTACGGTTCGAGAAGTGGGAAACTCATAACGCCGGAGCAGAAATTGGATCCGAGAACTT 1198
|||||||||||| || |||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1197 TTTACGGTTCGATAAATGGGAAACTCATGACGCCGGAGCAGAAGTTAGATCCGAGAACTT 1256
Query 1199 TTGCTGATTGTTATCATTGGTGTCTTCCGGGATTGCCTGATACATGGAACGAGTTGCTCT 1258
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1257 TTGCTGATTGTTATCATTGGTGTCTTCCGGGATTGCCTGATTCATGGAACGAGTTGCTCT 1316
Query 1259 CTCT 1262
||||
Sbjct 1317 CTCT 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5