BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483065
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40190.1 | Symbols: LEW3 | UDP-Glycosyltransferase superfami... 1397 0.0
> AT2G40190.1 | Symbols: LEW3 | UDP-Glycosyltransferase superfamily
protein | chr2:16785194-16787530 FORWARD LENGTH=1703
Length=1703
Score = 1397 bits (756), Expect = 0.0
Identities = 815/844 (97%), Gaps = 2/844 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATCTGCTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 ATGGCGATCTACTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGT 98
Query 61 TTATCACTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTGGGATTCTTCCAT 120
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 99 TTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCCAT 158
Query 121 CCGTACACGAATGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCAGTCAAAGCCATC 180
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 159 CCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCATT 218
Query 181 CAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCT 278
Query 241 GATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAATCTCCTCCTAAG 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 279 GATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAGTCTCCTCCTAAG 338
Query 301 GTGATTCATCTAAGCAAAAGGAAATGGATTGAAGAGAGGACTTACCCACATTTCACAATG 360
||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 339 GTGATTCATCTAAACAAAAGGAAATGGATTGAAGAGAGTACTTACCCACATTTTACAATG 398
Query 361 ATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCAAGTTCACTCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 399 ATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCATGTTCACTCCT 458
Query 421 TTGTATTTCCTTGACACTAGTGGATATGC-TTTCACATATCCTCTTGCTCGGATCTTTGG 479
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 459 TTGTATTTCCTTGACACTAGTGGATATGCGTTT-ACATATCCTCTTGCTCGGATCTTTGG 517
Query 480 TTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGT 577
Query 540 TCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATC 637
Query 600 TACTTGCAAGTTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATG 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TACTTGCAAATTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATG 697
Query 660 TACTCATCTAGCTATGGTTAACTCTTCGTGGACAAAGTCACATATCGAAGTGCTCTGGAG 719
||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 698 TACTCATTTAGCTATGGTTAACTCTTCGTGGACTAAGTCCCATATCGAAGTGCTTTGGAG 757
Query 720 AATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCATT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 758 AATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCGTT 817
Query 780 CCCACTTGAAAGATCTTCAGATCCTCCAAAAATCATATCCGTTGCTCAGTTTCGTCCTGA 839
|| |||||| |||| || |||||||| ||||||||||| |||||||| |||||||||||
Sbjct 818 TCCTCTTGAACGATCATCTGATCCTCCTAAAATCATATCAGTTGCTCAATTTCGTCCTGA 877
Query 840 GAAG 843
||||
Sbjct 878 GAAG 881
Score = 1007 bits (545), Expect = 0.0
Identities = 643/688 (93%), Gaps = 16/688 (2%)
Strand=Plus/Plus
Query 835 CCTGAGAAGAAATTAGATGCAGACGTCCCTCGACCCAAGCTCCAATTTGTGGGAAGTTGT 894
||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 916 CCTTAG-AGAAGCTAGATGCAGACGTCCCTAGACCCAAGCTCCAATTTGTGGGAAGTTGT 974
Query 895 AGAAACAATTCAGATGAAGAACGTCTGCAGAAATTGAAAGACAGAGCAGTTGAACTAAAA 954
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 975 AGAAACAATTCAGATGAAGAACGTCTGCAGAAATTGAAAGACAGAGCAGTGGAACTAAAA 1034
Query 955 GTGGATGGAGACGTGGAATTCTATAAAAACGCCATGTACAGAGAACTAGTGGAACTGCTA 1014
|| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1035 GTAGATGGAGACGTGCAATTCTATAAAAATGCCATGTACAGAGAACTAGTGGAACTGTTA 1094
Query 1015 GGAAATGCAGTTGCAGGAATGCATGGGATGATAGATGAACACTTTGGGATTAGCGTTGTT 1074
|||||||||||||||||| |||||||||||||||||||||||||||| || || ||||||
Sbjct 1095 GGAAATGCAGTTGCAGGACTGCATGGGATGATAGATGAACACTTTGGTATAAGTGTTGTT 1154
Query 1075 GAGTACATGGCGGCTGGTGCGATCCCAATAGCTCACAACTCAGCTGGACCCAAAATGGAC 1134
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1155 GAGTACATGGCTGCTGGTGCAATCCCAATAGCTCACAACTCAGCTGGACCTAAAATGGAC 1214
Query 1135 ATCGTGTTGGAAGAAGACGGACAAAGAACCGGGTTTCTTGCTGAGACTGTGGAGGAATAC 1194
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1215 ATTGTGTTGGAAGAAGACGGACAAAAAACCGGGTTTCTTGCTGAGACTGTGGAGGAATAC 1274
Query 1195 GCCGAAGCGATCCTTGAGATTGTGAAGATGAGTGAAAAAGAGAGGATTAAAATGGCTGAA 1254
|| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 1275 GCTGAAGCGATCCTTGAGATTGTGAAGATGAATGAAACAGAGAGGCTTAAAATGGCTGAA 1334
Query 1255 TCTGCTAGAAAACGAGCGGTAAGGTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACT 1314
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TCTGCTAGAAAACGAGCGGCAAGGTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACT 1394
Query 1315 GCGATTCAACCCATTTTCACTGGTCCTCTTAAATGACAGTTCT----C--T--------G 1360
||||||| |||||||||||| |||||||||||||||||||||| | | |
Sbjct 1395 GCGATTCGACCCATTTTCACAGGTCCTCTTAAATGACAGTTCTTAAACCCTCAAAACCTG 1454
Query 1361 CTTACTGCACTAGCTTTTAAACGCACAAGACAAGCTAGGTTATACCTTTTATCCTCTCTT 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 CTTACTGCACTAGCTTTTAAACGCACAAGACAAGCTAGGTTATACCTTTTATCCTCTCTT 1514
Query 1421 TATAGtttttttttttttAGTTCTGGTTAAAGGTCTGACGTAGACGTTGTAAGAAACAGT 1480
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 TATAGATTTTTTTTTTTAA-TTCTGGTTAAAGGTCTGACGTAGACGTTGTAAGAAACAGT 1573
Query 1481 TTGATCAAAAGAAACGAGTAAGATGTTC 1508
||| |||||||||||||||||||| |||
Sbjct 1574 TTGGTCAAAAGAAACGAGTAAGATCTTC 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77409240390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5